Evidence map›Paper›PMID 38342903›Full record

ArticleBMC plant biology2024

Identification of candidate genes and residues for improving nitrogen use efficiency in the N-sensitive medicinal plant Panax notoginseng.

Zhu Cun, Xia Li, Jin-Yan Zhang, Jie Hong, Li-Lin Gao, Jing Yang, Su-Yun Ma, Jun-Wen Chen

Open access · goldAbstract read
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Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
7.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Zhu CunCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Xia LiCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Jin-Yan ZhangCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Jie HongCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Li-Lin GaoCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Jing YangCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Su-Yun MaCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China.
Jun-Wen ChenCollege of Agronomy & Biotechnology, Yunnan Agricultural University, Fengyuan Road, Panlong District, Kunming, 650201, China. cjw31412@hotmail.com.
Yunnan Agricultural University · CN

Funding

Innovative Research Team of Science and Technology in Yunnan Province 202105AE160016Major Special Science and Technology Project of Yunnan Province 202102AA310048National Key Research and Development Program of China 2021YFD1601003National Natural Science Foundation of China 32160248 and 81860676
6 · The paper itself

Abstract

backgroundNitrogen (N) metabolism-related key genes and conserved amino acid sites in key enzymes play a crucial role in improving N use efficiency (NUE) under N stress. However, it is not clearly known about the molecular mechanism of N deficiency-induced improvement of NUE in the N-sensitive rhizomatous medicinal plant Panax notoginseng (Burk.) F. H. Chen. To explore the potential regulatory mechanism, the transcriptome and proteome were analyzed and the three-dimensional (3D) information and molecular docking models of key genes were compared in the roots of P. notoginseng grown under N regimes.

resultsTotal N uptake and the proportion of N distribution to roots were significantly reduced, but the NUE, N use efficiency in biomass production (NUEb), the recovery of N fertilizer (RNF) and the proportion of N distribution to shoot were increased in the N

conclusionsN deficiency might promote the expression of key genes for N uptake (genes NPF8.1, NPF4.6, AMT, AVP and NRT2), transport (NPF1.2 and NRT2.4), assimilation (proteins GS1 and GDH1), signaling and transduction (genes CIPK23, PLC2, NLP6, TCP20, and BT1) to enhance NUE in the rhizomatous species. N deficiency might induce Glu192, Glu199 and Glu400 to improve the biological activity of GS1 and GDH, this has been hypothesized to be the main reason for the enhanced ability of N assimilation in N-deficient rhizomatous species. The key genes and residues involved in improving NUE provide excellent candidates for the breeding of medicinal plants.

Indexed as

Panax notoginsengPlants, MedicinalAmino AcidsGene Expression Regulation, PlantMolecular Docking SimulationNitrogenPlant BreedingAmino AcidsNitrogenMolecular dockingNitrogen deficiencyNitrogen metabolismNitrogen use efficiencyPanax notoginseng

Identifiers

PMID38342903
PMCPMC10860327
OpenAlexW4391885920

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.