Evidence map›Paper›PMID 38340348›Full record

ArticleNucleic acids research2024

Chromatin damage generated by DNA intercalators leads to degradation of RNA Polymerase II.

Jaime A Espinoza, Dimitris C Kanellis, Sheetanshu Saproo, Karla Leal, Johana Fernandez Martinez, Jiri Bartek, Mikael S Lindström

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

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  10. Targeting the 3D genome by anthracyclines for chemotherapeutic effects.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
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  17. Aclarubicin Reduces the Nuclear Mobility of Human DNA Topoisomerase IIβ.International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Jaime A EspinozaScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.ORCID 0000-0002-0731-2715
Dimitris C KanellisScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.ORCID 0000-0001-8690-2010
Sheetanshu SaprooScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.ORCID 0000-0002-2221-1840
Karla LealScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.ORCID 0000-0001-7526-464X
Johana Fernandez MartinezScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.
Jiri BartekScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.ORCID 0000-0003-2013-7525
Mikael S LindströmScience for Life Laboratory, Division of Genome Biology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, S-171 21 Stockholm, Sweden.ORCID 0000-0003-1148-8497
Science for Life Laboratory · SE

Funding

Cancerfonden 170176Radiumhemmets forskningsfonder 164102Swedish Research Council VR-MHVetenskapsrådet VR-MH 2014-46602-117891-30
6 · The paper itself

Abstract

In cancer therapy, DNA intercalators are mainly known for their capacity to kill cells by inducing DNA damage. Recently, several DNA intercalators have attracted much interest given their ability to inhibit RNA Polymerase I transcription (BMH-21), evict histones (Aclarubicin) or induce chromatin trapping of FACT (Curaxin CBL0137). Interestingly, these DNA intercalators lack the capacity to induce DNA damage while still retaining cytotoxic effects and stabilize p53. Herein, we report that these DNA intercalators impact chromatin biology by interfering with the chromatin stability of RNA polymerases I, II and III. These three compounds have the capacity to induce degradation of RNA polymerase II and they simultaneously enable the trapping of Topoisomerases TOP2A and TOP2B on the chromatin. In addition, BMH-21 also acts as a catalytic inhibitor of Topoisomerase II, resembling Aclarubicin. Moreover, BMH-21 induces chromatin trapping of the histone chaperone FACT and propels accumulation of Z-DNA and histone eviction, similarly to Aclarubicin and CBL0137. These DNA intercalators have a cumulative impact on general transcription machinery by inducing accumulation of topological defects and impacting nuclear chromatin. Therefore, their cytotoxic capabilities may be the result of compounding deleterious effects on chromatin homeostasis.

Indexed as

ChromatinDNA Topoisomerases, Type IIIntercalating AgentsRNA Polymerase IIAclarubicinAntigens, NeoplasmCarbazolesDiketopiperazinesDNADNA-Binding ProteinsDNA DamageHeterocyclic Compounds, 4 or More RingsHigh Mobility Group ProteinsHistonesHumansPoly-ADP-Ribose Binding ProteinsAclarubicinAntigens, NeoplasmBMH-21CarbazolesCBLC137ChromatinDiketopiperazinesDNADNA-Binding ProteinsDNA Topoisomerases, Type IIHeterocyclic Compounds, 4 or More RingsHigh Mobility Group ProteinsHistonesIntercalating AgentsPoly-ADP-Ribose Binding ProteinsRNA Polymerase IRNA Polymerase IIRNA Polymerase IIISSRP1 protein, humanTOP2A protein, humanTOP2B protein, humanTopoisomerase II InhibitorsTranscriptional Elongation Factors

Identifiers

PMID38340348
PMCPMC11077059
OpenAlexW4391713947

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.