Evidence map›Paper›PMID 38339029›Full record

ArticleInternational journal of molecular sciences2024

Differential Gene Expression following

Joseph M Gumina, Adam E Richardson, Mahmudul Hasan Shojiv, Antonio E Chambers, Siara N Sandwith, Michael A Reisinger, Taylor J Karns, Tyler L Osborne, Hasna N Alashi, Quinn T Anderson and 9 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Special Issue "Bioinformatics of Unusual DNA and RNA Structures".International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Joseph M GuminaDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Adam E RichardsonDepartment of Biology, Ball State University, Muncie, IN 47306, USA.ORCID 0009-0008-5395-8462
Mahmudul Hasan ShojivDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Antonio E ChambersDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Siara N SandwithDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Michael A ReisingerDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Taylor J KarnsDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Tyler L OsborneDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Hasna N AlashiDepartment of Biology, Ball State University, Muncie, IN 47306, USA.ORCID 0000-0002-4723-3501
Quinn T AndersonDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Meredith E SharlowDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Dylan C SeilerDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Evan M RogersDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Anna R BartosikSchool of Medicine, University of Virginia, Charlottesville, VA 22908, USA.
Melissa A SmaldinoDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
James P VaughnNanoMedica LLC, Winston-Salem, NC 27106, USA.
Yuh-Hwa WangSchool of Medicine, University of Virginia, Charlottesville, VA 22908, USA.ORCID 0000-0002-9804-9368
Philip J SmaldinoDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Robert A HaneyDepartment of Biology, Ball State University, Muncie, IN 47306, USA.
Ball State University · USUniversity of Virginia · USNanoMedica (United States) · US

Funding

Genome-wide DNA Secondary Structure Analysis to Investigate DNA FragilityR01GM101192 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI WANG, YUH-HWA · 2013 to 2024
$2.8M
Implicating the major G-quadruplex helicase, DHX36, as a novel pathogenic modifier of C9ORF72 frontal temporal dementiaR15AG067291 · NIA · BALL STATE UNIVERSITY · PI SMALDINO, PHILIP J · 2020 to 2024
$939k
Disrupting two cancer hallmarks with one target: DHX36, the major G-quadruplex helicaseR15CA252996 · NCI · BALL STATE UNIVERSITY · PI OLESEN, JAMES B · 2020 to 2020
$428k
NCI NIH HHS L70 CA274898NCI NIH HHS R15CA252996-01NIA NIH HHS R15 AG067291NIGMS NIH HHS R01 GM101192NIGMS NIH HHS RO1GM101192
6 · The paper itself

Abstract

G-quadruplexes (G4s) are secondary DNA and RNA structures stabilized by positive cations in a central channel formed by stacked tetrads of Hoogsteen base-paired guanines. G4s form from G-rich sequences across the genome, whose biased distribution in regulatory regions points towards a gene-regulatory role. G4s can themselves be regulated by helicases, such as DHX36 (aliases: G4R1 and RHAU), which possess the necessary activity to resolve these stable structures. G4s have been shown to both positively and negatively regulate gene expression when stabilized by ligands, or through the loss of helicase activity. Using

Indexed as

DEAD-box RNA HelicasesG-QuadruplexesNeoplasmsGene ExpressionHumansJurkat CellsRNADEAD-box RNA HelicasesDHX36 protein, humanRNADHX36G4R1G-quadruplexhelicaseJurkat cellsleukemiaRHAU

Identifiers

PMID38339029
PMCPMC10855491
OpenAlexW4391449763

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.