Evidence map›Paper›PMID 38337025›Full record

ArticleScientific reports2024

Full-length 16S rDNA sequencing based on Oxford Nanopore Technologies revealed the association between gut-pharyngeal microbiota and tuberculosis in cynomolgus macaques.

Vorthon Sawaswong, Prangwalai Chanchaem, Pavit Klomkliew, Suwatchareeporn Rotcheewaphan, Suthirote Meesawat, Taratorn Kemthong, Mutchamon Kaewparuehaschai, Kirana Noradechanon, Monya Ekatat, Reka Kanitpun and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Pike: OTU-Level Analysis for Oxford Nanopore Amplicon Metagenomics.International journal of molecular sciences · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Vorthon SawaswongDepartment of Biochemistry, Center of Excellence in Systems Microbiology, Faculty of Medicine, Chulalongkorn University, 1873 Rama IV Road, Patumwan, Bangkok, 10330, Thailand.
Prangwalai ChanchaemDepartment of Biochemistry, Center of Excellence in Systems Microbiology, Faculty of Medicine, Chulalongkorn University, 1873 Rama IV Road, Patumwan, Bangkok, 10330, Thailand.
Pavit KlomkliewDepartment of Biochemistry, Center of Excellence in Systems Microbiology, Faculty of Medicine, Chulalongkorn University, 1873 Rama IV Road, Patumwan, Bangkok, 10330, Thailand.
Suwatchareeporn RotcheewaphanDepartment of Biochemistry, Center of Excellence in Systems Microbiology, Faculty of Medicine, Chulalongkorn University, 1873 Rama IV Road, Patumwan, Bangkok, 10330, Thailand.
Suthirote MeesawatNational Primate Research Center of Thailand, Chulalongkorn University, Saraburi, 18110, Thailand.
Taratorn KemthongNational Primate Research Center of Thailand, Chulalongkorn University, Saraburi, 18110, Thailand.
Mutchamon KaewparuehaschaiWildlife Conservation Office, Department of National Parks Wildlife and Plant Conservation, Bangkok, 10900, Thailand.
Kirana NoradechanonWildlife Conservation Office, Department of National Parks Wildlife and Plant Conservation, Bangkok, 10900, Thailand.
Monya EkatatNational Institute of Animal Health (NIAH), Bangkok, 10900, Thailand.
Reka KanitpunNational Institute of Animal Health (NIAH), Bangkok, 10900, Thailand.
Prapaporn SrilohasinOffice for Research, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
Saradee WaritIndustrial Tuberculosis Team, Industrial Medical Molecular Biotechnology Research Group, National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, 12120, Thailand.
Angkana ChaiprasertOffice for Research, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
Suchinda MalaivijitnondNational Primate Research Center of Thailand, Chulalongkorn University, Saraburi, 18110, Thailand.
Sunchai PayungpornDepartment of Biochemistry, Center of Excellence in Systems Microbiology, Faculty of Medicine, Chulalongkorn University, 1873 Rama IV Road, Patumwan, Bangkok, 10330, Thailand. sp.medbiochemcu@gmail.com.
Chulalongkorn University · THDepartment of National Parks Wildlife and Plant Conservation · THMahidol University · THNational Institute of Health of Thailand · THNational Center for Genetic Engineering and Biotechnology · THSiriraj Hospital · TH

Funding

National Science, Research and Innovation Fund (NSRF) via the Program Management Unit for Human Resources and Institutional Development, Research and Innovation B05-F640122Thailand Science Research and Innovation Fund, Chulalongkorn University HEA663000023
6 · The paper itself

Abstract

Tuberculosis (TB) is an infectious disease caused by the Mycobacterium tuberculosis complex (Mtbc), which develops from asymptomatic latent TB to active stages. The microbiome was purposed as a potential factor affecting TB pathogenesis, but the study was limited. The present study explored the association between gut-pharyngeal microbiome and TB stages in cynomolgus macaques using the full-length 16S rDNA amplicon sequencing based on Oxford Nanopore Technologies. The total of 71 macaques was divided into TB (-) control, TB (+) latent and TB (+) active groups. The differential abundance analysis showed that Haemophilus hemolyticus was decreased, while Prevotella species were increased in the pharyngeal microbiome of TB (+) macaques. In addition, Eubacterium coprostanoligenes in the gut was enriched in TB (+) macaques. Alteration of these bacteria might affect immune regulation and TB severity, but details of mechanisms should be further explored and validated. In summary, microbiota may be associated with host immune regulation and affect TB progression. The findings suggested the potential mechanisms of host-microbes interaction, which may improve the understanding of the role of microbiota and help develop therapeutics for TB in the future.

Indexed as

Gastrointestinal MicrobiomeMicrobiotaNanoporesTuberculosisAnimalsMacaca fascicularisRNA, Ribosomal, 16SRNA, Ribosomal, 16SCynomolgus macaqueFull-length 16S sequencingGut-pharyngeal microbiomeTuberculosis

Identifiers

PMID38337025
PMCPMC10858278
OpenAlexW4391722886

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.