Evidence map›Paper›PMID 38335815›Full record

ArticleEuropean journal of medicinal chemistry2024

Exploration of P1 and P4 modifications of nirmatrelvir: Design, synthesis, biological evaluation, and X-ray structural studies of SARS-CoV-2 Mpro inhibitors.

Arun K Ghosh, Monika Yadav, Satyanarayana Iddum, Somayeh Ghazi, Emma K Lendy, Uttara Jayashankar, Sydney N Beechboard, Yuki Takamatsu, Shin-Ichiro Hattori, Masayuki Amano and 3 more

Open access · greenAbstract read
In one paragraph

Article in European journal of medicinal chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Next-generation inhibitors of SARS-CoV-2 MNature communications · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Arun K GhoshDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA; Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, IN, 47907, USA. Electronic address: akghosh@purdue.edu.
Monika YadavDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA.
Satyanarayana IddumDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA.
Somayeh GhaziDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA.
Emma K LendyDepartment of Biochemistry, Purdue University, West Lafayette, IN, 47907, USA.
Uttara JayashankarDepartment of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Sydney N BeechboardDepartment of Biochemistry, Purdue University, West Lafayette, IN, 47907, USA.
Yuki TakamatsuDepartment of Refractory Viral Diseases, National Center for Global Health and Medicine, Shinjuku, Tokyo, 162-8655, Japan.
Shin-Ichiro HattoriDepartment of Refractory Viral Diseases, National Center for Global Health and Medicine, Shinjuku, Tokyo, 162-8655, Japan.
Masayuki AmanoDepartment of Clinical Retrovirology, Joint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, 860-0811, Japan.
Nobuyo Higashi-KuwataDepartment of Refractory Viral Diseases, National Center for Global Health and Medicine, Shinjuku, Tokyo, 162-8655, Japan.
Hiroaki MitsuyaDepartment of Refractory Viral Diseases, National Center for Global Health and Medicine, Shinjuku, Tokyo, 162-8655, Japan; Department of Infectious Diseases, Kumamoto University School of Medicine, Kumamoto, 860-8556, Japan; Experimental Retrovirology Section, HIV and AIDS Malignancy Branch National Cancer Institute, Bethesda, MD, 20892, USA.
Andrew D MesecarDepartment of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, IN, 47907, USA; Department of Biochemistry, Purdue University, West Lafayette, IN, 47907, USA; Department of Biological Sciences, Purdue University, West Lafayette, IN, 47907, USA.
Purdue University West Lafayette · USNational Center for Global Health and Medicine · JPKumamoto University · JP

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI John Tesmer · 1985 to 2026
$43.4M
Protein Expression and PurificationP01AI060915 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI JOHNSON, MICHAEL E. · 2005 to 2009
$7.7M
SARS-CoV-2 protease inhibitors for treating COVID-19R01AI158649 · NIAID · PURDUE UNIVERSITY · PI ARUN K GHOSH, ANDREW D MESECAR · 2021 to 2026
$3.8M
Development of therapeutics for SARS-CoV-2 infectionZIABC012018 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MITSUYA, HIROAKI · 2020 to 2025
$2.6M
Design & Synthesis of Nonpeptide Protease InhibitorsR01AI150466 · NIAID · PURDUE UNIVERSITY · PI ARUN K GHOSH · 2023 to 2026
$2.4M
Purdue University Molecular Biophysics Training ProgramT32GM132024 · NIGMS · PURDUE UNIVERSITY · PI Angeline Marie Lyon, John Tesmer · 2019 to 2026
$2.0M
Design & Synthesis of Nonpeptide Protease InhibitorsR37AI150466 · NIAID · PURDUE UNIVERSITY · PI GHOSH, ARUN K · 2019 to 2020
$969k
Drug Discovery in Infectious Disease TrainingT32AI148103 · NIAID · PURDUE UNIVERSITY · PI STAHELIN, ROBERT VIRGIL, YEO, YOON · 2020 to 2024
$949k
NCI NIH HHS P30 CA023168NIAID NIH HHS HHSN272201700060CNIAID NIH HHS P01 AI060915NIAID NIH HHS R01 AI150466NIAID NIH HHS R01 AI158649NIAID NIH HHS R37 AI150466NIAID NIH HHS T32 AI148103NIGMS NIH HHS T32 GM132024
6 · The paper itself

Abstract

We report the synthesis, biological evaluation, and X-ray structural studies of a series of SARS-CoV-2 Mpro inhibitors based upon the X-ray crystal structure of nirmatrelvir, an FDA approved drug that targets the main protease of SARS-CoV-2. The studies involved examination of various P4 moieties, P1 five- and six-membered lactam rings to improve potency. In particular, the six-membered P1 lactam ring analogs exhibited high SARS-CoV-2 Mpro inhibitory activity. Several compounds effectively blocked SARS-CoV-2 replication in VeroE6 cells. One of these compounds maintained good antiviral activity against variants of concern including Delta and Omicron variants. A high-resolution X-ray crystal structure of an inhibitor bound to SARS-CoV-2 Mpro was determined to gain insight into the ligand-binding properties in the Mpro active site.

Indexed as

COVID-19SARS-CoV-2Antiviral AgentsHumansLactamsLeucineMolecular Docking SimulationNitrilesProtease InhibitorsX-RaysAntiviral AgentsLactamsLeucineNitrilesProtease InhibitorsAntiviralCOVID-19Protease inhibitorSARS-CoV-2 mproSynthesisX-ray structure

Identifiers

PMID38335815
PMCPMC10964431
OpenAlexW4391449899

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.