Evidence map›Paper›PMID 38335281›Full record

ArticleScience advances2024

Sequential CRISPR screening reveals partial NatB inhibition as a strategy to mitigate alpha-synuclein levels in human neurons.

Saranya Santhosh Kumar, Nima N Naseri, Sarshan R Pather, Erinc Hallacli, Alain Ndayisaba, Chris Buenaventura, Karen Acosta, Jennifer Roof, Hossein Fazelinia, Lynn A Spruce and 4 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  9. Article
  10. CRISPRi: a way to integrate iPSC-derived neuronal models.Biochemical Society transactions · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Saranya Santhosh KumarDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0009-0007-1416-2309
Nima N NaseriCenter for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0001-8281-219X
Sarshan R PatherCenter for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Erinc HallacliDivision of Movement Disorders and Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-5850-6974
Alain NdayisabaDivision of Movement Disorders and Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.
Chris BuenaventuraCenter for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Karen AcostaDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-6825-239X
Jennifer RoofProteomics Core Facility, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-3852-1330
Hossein FazeliniaProteomics Core Facility, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Lynn A SpruceProteomics Core Facility, The Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0001-9640-9158
Kelvin LukDepartment of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-6591-6269
Vikram KhuranaDivision of Movement Disorders and Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA.
Elizabeth RhoadesDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-1741-0650
Ophir ShalemCenter for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-2267-0801
Children's Hospital of Philadelphia · USUniversity of Pennsylvania · USBrigham and Women's Hospital · USBroad Institute · US

Funding

Project IV "Tackling Heterogeneity of Cognitive Trajectory in LBD"U19AG062418 · NIA · UNIVERSITY OF PENNSYLVANIA · PI CHEN-PLOTKIN, ALICE S · 2019 to 2023
$18.1M
Elucidating the Biological Differences Between Distinct Fibrillar and Non-Fibrillar Alpha-Synuclein Inclusions in Human Stem-Cell ModelsR01NS109209 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI KHURANA, VIKRAM · 2020 to 2024
$4.5M
Propagation of Lewy pathology in Parkinsons diseaseR01NS088322 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI LUK, KELVIN C · 2015 to 2025
$4.0M
Investigating physiologic and pathophysiologic connections between the Parkinson's disease protein alpha-synuclein and RNA binding proteinsR01NS128142 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI Vikram Khurana · 2023 to 2026
$3.3M
Structural biology and molecular biophysics training programT32GM132039 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Ben E. Black, Elizabeth Rhoades · 2019 to 2026
$3.3M
Structural basis and physiological consequences of alpha-Synuclein binding to neurexin 1betaR01NS120625 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI RHOADES, ELIZABETH · 2021 to 2025
$2.9M
Direct and rapid control of proteins at scaleDP2GM137416 · NIGMS · CHILDREN'S HOSP OF PHILADELPHIA · PI SHALEM, OPHIR · 2019 to 2022
$2.8M
Bruker RapifleX MALDI TOF/TOF Mass SpectrometerS10OD030460 · OD · UNIVERSITY OF PENNSYLVANIA · PI PETERSSON, ERNEST JAMES · 2021 to 2021
$881k
Dissecting the mechanisms that underlie mislocalization and aggregation of RNA binding proteins in neurodegenerative diseasesR03NS111447 · NINDS · CHILDREN'S HOSP OF PHILADELPHIA · PI SHALEM, OPHIR · 2019 to 2019
$352k
Isoform-dependent effects of tau phosphorylation in Alzheimer's diseaseF32AG079537 · NIA · UNIVERSITY OF PENNSYLVANIA · PI NASERI, NIMA NICK · 2022 to 2023
$139k
NIA NIH HHS F32 AG079537NIA NIH HHS U19 AG062418NIGMS NIH HHS DP2 GM137416NIGMS NIH HHS T32 GM132039NIH HHS S10 OD030460NINDS NIH HHS R01 NS088322NINDS NIH HHS R01 NS109209NINDS NIH HHS R01 NS120625NINDS NIH HHS R01 NS128142NINDS NIH HHS R03 NS111447
6 · The paper itself

Abstract

Alpha-synuclein (αSyn) protein levels correlate with the risk and severity of Parkinson's disease and related neurodegenerative diseases. Lowering αSyn is being actively investigated as a therapeutic modality. Here, we systematically map the regulatory network that controls endogenous αSyn using sequential CRISPR-knockout and -interference screens in an αSyn gene (

Indexed as

alpha-SynucleinN-Terminal Acetyltransferase BParkinson DiseaseCell LineClustered Regularly Interspaced Short Palindromic RepeatsHumansMethionyl AminopeptidasesNeuronsalpha-SynucleinMETAP2 protein, humanMethionyl AminopeptidasesNAA20 protein, humanN-Terminal Acetyltransferase B

Identifiers

PMID38335281
PMCPMC10857481
OpenAlexW4391677843

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.