Evidence map›Paper›PMID 38334148›Full record

ReviewBiochemical Society transactions2024

Hyperspectral imaging and dynamic region of interest tracking approaches to quantify localized cAMP signals.

Santina C Johnson, Naga S Annamdevula, Silas J Leavesley, C Michael Francis, Thomas C Rich

Open access · greenAbstract readReview
In one paragraph

Review in Biochemical Society transactions, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Design of Multiplexed, Live Cell Imaging Experiments Using Excitation Scan-Based Hyperspectral Imaging Microscopy.Proceedings of SPIE--the International Society for Optical Engineering · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Santina C JohnsonDepartment of Pharmacology, Frederick P. Whiddon College of Medicine, University of South Alabama, Mobile, AL, U.S.A.
Naga S AnnamdevulaDepartment of Pharmacology, Frederick P. Whiddon College of Medicine, University of South Alabama, Mobile, AL, U.S.A.
Silas J LeavesleyDepartment of Pharmacology, Frederick P. Whiddon College of Medicine, University of South Alabama, Mobile, AL, U.S.A.
C Michael FrancisDepartment of Physiology and Cell Biology, Frederick P. Whiddon College of Medicine, University of South Alabama, Mobile, AL, U.S.A.
Thomas C RichDepartment of Pharmacology, Frederick P. Whiddon College of Medicine, University of South Alabama, Mobile, AL, U.S.A.ORCID 0000-0003-0453-1231
University of South Alabama · US

Funding

T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI TOWNSLEY, MARY I · 2001 to 2022
$34.6M
G Protein-Coupled Receptor Signaling in Airway Smooth MuR01HL058506 · NHLBI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RAYMOND B. PENN · 2001 to 2026
$9.3M
NRSA Training CoreTL1TR003106 · NCATS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SAAG, KENNETH G · 2019 to 2023
$3.7M
Compartmentalized signaling and crosstalk in airway myocytesR01HL169522 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI RENNOLDS S OSTROM, RAYMOND B. PENN · 2023 to 2026
$2.2M
TRPC4-mediated calcium signals accelerate vascular remodeling in pulmonary arterial hypertensionK25HL136869 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI FRANCIS, CHRISTOPHER MICHAEL · 2017 to 2021
$798k
Zeiss LSM 980 Airyscan confocal microscopeS10OD028606 · OD · UNIVERSITY OF SOUTH ALABAMA · PI RICH, THOMAS C · 2020 to 2020
$600k
Request for a Spectral Confocal MicroscopeS10RR027535 · NCRR · UNIVERSITY OF SOUTH ALABAMA · PI RICH, THOMAS C · 2010 to 2010
$397k
NCATS NIH HHS TL1 TR003106NCRR NIH HHS S10 RR027535NHLBI NIH HHS K25 HL136869NHLBI NIH HHS P01 HL066299NHLBI NIH HHS R01 HL058506NHLBI NIH HHS R01 HL169522NIH HHS S10 OD028606
6 · The paper itself

Abstract

Cyclic adenosine monophosphate (cAMP) is a ubiquitous second messenger known to orchestrate a myriad of cellular functions over a wide range of timescales. In the last 20 years, a variety of single-cell sensors have been developed to measure second messenger signals including cAMP, Ca2+, and the balance of kinase and phosphatase activities. These sensors utilize changes in fluorescence emission of an individual fluorophore or Förster resonance energy transfer (FRET) to detect changes in second messenger concentration. cAMP and kinase activity reporter probes have provided powerful tools for the study of localized signals. Studies relying on these and related probes have the potential to further revolutionize our understanding of G protein-coupled receptor signaling systems. Unfortunately, investigators have not been able to take full advantage of the potential of these probes due to the limited signal-to-noise ratio of the probes and the limited ability of standard epifluorescence and confocal microscope systems to simultaneously measure the distributions of multiple signals (e.g. cAMP, Ca2+, and changes in kinase activities) in real time. In this review, we focus on recently implemented strategies to overcome these limitations: hyperspectral imaging and adaptive thresholding approaches to track dynamic regions of interest (ROI). This combination of approaches increases signal-to-noise ratio and contrast, and allows identification of localized signals throughout cells. These in turn lead to the identification and quantification of intracellular signals with higher effective resolution. Hyperspectral imaging and dynamic ROI tracking approaches offer investigators additional tools with which to visualize and quantify multiplexed intracellular signaling systems.

Indexed as

CalciumHyperspectral ImagingCyclic AMPFluorescence Resonance Energy TransferSecond Messenger SystemsSignal TransductionCalciumCyclic AMPcalcium signalingcAMPdynamic region of interestG protein-coupled receptorsmicrodomainprotein kinase A

Identifiers

PMID38334148
PMCPMC11115359
OpenAlexW4391680331

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.