Evidence map›Paper›PMID 38334125›Full record

ArticleNeuro-oncology2024

Unraveling the complexity of the senescence-associated secretory phenotype in adamantinomatous craniopharyngioma using multimodal machine learning analysis.

Eric W Prince, John R Apps, John Jeang, Keanu Chee, Stephen Medlin, Eric M Jackson, Roy Dudley, David Limbrick, Robert Naftel, James Johnston and 17 more

Open access · greenAbstract read
In one paragraph

Article in Neuro-oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
22.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 20 institutions in 4 countries.

Eric W PrinceDepartment of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0001-7359-6608
John R AppsOncology Department, Birmingham Women's and Children's NHS Foundation Trust, Birmingham, UK.
John JeangDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, Massachusetts, USA.
Keanu CheeDepartment of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Stephen MedlinDepartment of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Eric M JacksonDepartment of Neurosurgery, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Roy DudleyDepartment of Neurosurgery, McGill University, Montreal, Quebec, Canada.
David LimbrickDepartment of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA.
Robert NaftelDepartment of Neurological Surgery, Vanderbilt University Medical Center, Monroe Carell Jr. Children's Hospital at Vanderbilt, Nashville, Tennessee, USA.
James JohnstonDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, Massachusetts, USA.
Neil FeldsteinDepartment of Neurosurgery, Columbia University Medical Center, New York, New York, USA.
Laura M ProloDivision of Pediatric Neurosurgery, Department of Neurosurgery, Lucile Packard Children's Hospital, Stanford University School of Medicine, Palo Alto, California, USA.
Kevin GinnThe Division of Pediatric Hematology and Oncology, Department of Pediatrics, Children's Mercy Hospital, Kansas City, Missouri, USA.
Toba NiaziDepartment of Pediatric Neurosurgery, Nicklaus Children's Hospital, Miami, Florida, USA.
Amy SmithDepartment of Pediatric Hematology-Oncology, Arnold Palmer Hospital, Orlando, Florida, USA.
Lindsay KilburnChildren's National Health System, Center for Cancer and Blood Disorders, Washington, District of Columbia, USA.
Joshua ChernDepartments of Pediatrics and Neurosurgery, Emory University School of Medicine, Atlanta, Georgia, USA.
Jeffrey LeonardDivision of Pediatric Neurosurgery, Nationwide Children's Hospital, Columbus, Ohio, USA.
Sandi LamDivision of Neurosurgery, Ann & Robert H. Lurie Children's Hospital of Chicago, Chicago, Illinois, USA.
David S HershDivision of Neurosurgery, Connecticut Children's, Hartford, Connecticut, USA.
Jose Mario Gonzalez-MeljemU. Tecnologico de Monterrey, School of Engineering and Sciences, Mexico City, Mexico.
Vladimir AmaniMorgan Adams Foundation for Pediatric Brain Tumor Research Program, Aurora, Colorado, USA.
Andrew M DonsonMorgan Adams Foundation for Pediatric Brain Tumor Research Program, Aurora, Colorado, USA.
Siddhartha S MitraDepartment of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Pratiti BandopadhayayDana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, Massachusetts, USA.ORCID 0000-0002-4175-4760
Juan Pedro Martinez-BarberaDevelopmental Biology and Cancer, Birth Defects Research Centre, GOS Institute of Child Health, University College London, London, UK.ORCID 0000-0002-5292-7276
Todd C HankinsonDepartment of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Morgan Adams Foundation · USUniversity of Alabama at Birmingham · USArnold Palmer Hospital for Children · USBirmingham Women’s and Children’s NHS Foundation Trust · GBChildren's Mercy Hospital · USChildren's National · USColorado School of Public Health · USColumbia University Irving Medical Center · USConnecticut Children's Medical Center · USDana-Farber/Boston Children's Cancer and Blood Disorders Center · USEmory University · USJohns Hopkins University · USLucile Packard Children's Hospital · USLurie Children's Hospital · USMcGill University · CAMiami Children's Hospital · USMonroe Carell Jr. Children's Hospital · USNationwide Children's Hospital · USTecnológico de Monterrey · MXUniversity College London · GB

Funding

Computational Bioscience Program Training GrantT15LM009451 · NLM · UNIVERSITY OF COLORADO DENVER · PI Katherina Kechris-Mays, Arjun Krishnan · 2007 to 2026
$11.7M
NRSA Training CoreTL1TR002533 · NCATS · UNIVERSITY OF COLORADO DENVER · PI CICUTTO, LISA · 2018 to 2022
$3.0M
Cancer Research UK 28160NCATS NIH HHS TL1 TR002533NLM NIH HHS T15 LM009451The Brain Tumor Charity
6 · The paper itself

Abstract

backgroundCellular senescence can have positive and negative effects on the body, including aiding in damage repair and facilitating tumor growth. Adamantinomatous craniopharyngioma (ACP), the most common pediatric sellar/suprasellar brain tumor, poses significant treatment challenges. Recent studies suggest that senescent cells in ACP tumors may contribute to tumor growth and invasion by releasing a senesecence-associated secretory phenotype. However, a detailed analysis of these characteristics has yet to be completed.

methodsWe analyzed primary tissue samples from ACP patients using single-cell, single-nuclei, and spatial RNA sequencing. We performed various analyses, including gene expression clustering, inferred senescence cells from gene expression, and conducted cytokine signaling inference. We utilized LASSO to select essential gene expression pathways associated with senescence. Finally, we validated our findings through immunostaining.

resultsWe observed significant diversity in gene expression and tissue structure. Key factors such as NFKB, RELA, and SP1 are essential in regulating gene expression, while senescence markers are present throughout the tissue. SPP1 is the most significant cytokine signaling network among ACP cells, while the Wnt signaling pathway predominantly occurs between epithelial and glial cells. Our research has identified links between senescence-associated features and pathways, such as PI3K/Akt/mTOR, MYC, FZD, and Hedgehog, with increased P53 expression associated with senescence in these cells.

conclusionsA complex interplay between cellular senescence, cytokine signaling, and gene expression pathways underlies ACP development. Further research is crucial to understand how these elements interact to create novel therapeutic approaches for patients with ACP.

Indexed as

Cellular SenescenceCraniopharyngiomaMachine LearningPituitary NeoplasmsBiomarkers, TumorChildFemaleGene Expression Regulation, NeoplasticHumansMalePhenotypeBiomarkers, Tumoradamantinomatous craniopharyngioma (ACP)machine learningnext generation sequencingpediatric neuro-oncologysenescence-associated secretory phenotype (SASP)

Identifiers

PMID38334125
PMCPMC11145462
OpenAlexW4391680089

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.