Evidence map›Paper›PMID 38332750›Full record

ArticleThe Journal of infectious diseases2024

New Window Into Hepatitis B in Africa: Liver Sampling Combined With Single-Cell Omics Enables Deep and Longitudinal Assessment of Intrahepatic Immunity in Zambia.

Taonga Musonda, Michael S Wallace, Hailey Patel, Owen P Martin, Christopher Oetheimer, Simutanyi Mwakamui, Edford Sinkala, Bright Nsokolo, Annie Kanunga, Georg Lauer and 6 more

Registry-linked trialOpen access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07589985 (Hep Mec Cohort in Zambia), which is not on this map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07589985 recruitingnot on this map

Hep Mec Cohort in Zambia

TypeobservationalSponsorUniversity of Alabama at BirminghamRan2020 to 2030Enrolled390ConditionsHepatitis B, HIV
3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
  3. [Revealing research progress for immunological characteristics of chronic hepatitis B applying single-cell RNA sequencing technology].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 4 countries.

Taonga MusondaTropical Gastroenterology and Nutrition Group, University of Zambia, Lusaka, Zambia.ORCID 0009-0008-9533-448X
Michael S WallaceDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Hailey PatelDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Owen P MartinDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Christopher OetheimerDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Simutanyi MwakamuiTropical Gastroenterology and Nutrition Group, University of Zambia, Lusaka, Zambia.
Edford SinkalaTropical Gastroenterology and Nutrition Group, University of Zambia, Lusaka, Zambia.
Bright NsokoloDepartment of Medicine, Levy Mwanawasa University Teaching Hospital, Lusaka, Zambia.
Annie KanungaTropical Gastroenterology and Nutrition Group, University of Zambia, Lusaka, Zambia.
Georg LauerDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Raymond T ChungDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Gilles WandelerDepartment of Infectious Diseases, Bern University Hospital, University of Bern, Bern, Switzerland.
Debika BhattacharyaDivision of Infectious Diseases, University of California Los Angeles, Los Angeles, California, USA.ORCID 0000-0002-2136-7763
Paul KellyTropical Gastroenterology and Nutrition Group, University of Zambia, Lusaka, Zambia.ORCID 0000-0003-0844-6448
Nadia AlatrakchiDivision of Gastroenterology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Michael J VinikoorDepartment of Medicine, University Teaching Hospital, Lusaka, Zambia.
Massachusetts General Hospital · USCentre for Infectious Disease Research in Zambia · ZMUniversity of Zambia · ZMUniversity Teaching Hospital · ZMQueen Mary University of London · GBUniversity of Bern · CHUniversity of California, Los Angeles · US

Funding

Observational Antiretroviral Studies In Southern Africa (OASIS) CollaborationU01AI069924 · NIAID · UNIVERSITAT BERN · PI Cleophas Chimbetete, Mary-Ann Davies · 2006 to 2026
$55.9M
Immunologic correlates of functional cure of HBV with immune checkpoint blockadeR01AI148648 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, RAYMOND T, LAUER, GEORG MICHAEL · 2020 to 2024
$4.2M
Mechanisms of HBV Functional Cure During Tenofovir-based ART in HIV/HBV CoinfectionR01AI147727 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael Jeffrey Vinikoor · 2019 to 2026
$3.9M
Cooperative mechanisms of HIV-enhanced liver fibrogenesis in HBV CoinfectionR01AI155140 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI CHUNG, RAYMOND T, LIN, WENYU · 2020 to 2025
$3.5M
HBV-specific T cell immunity in HBV/HIV coinfectionR37AI179640 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GEORG Michael LAUER, Michael Jeffrey Vinikoor · 2023 to 2026
$2.9M
Impact of HIV PMTCT Interventions on HIV/HBV Co-infected Women and Their InfantsR01HD085862 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BHATTACHARYA, DEBIKA · 2016 to 2018
$1.3M
Impact of antiretroviral therapy on liver fibrosis in Zambian HIV/HBV patientsK01TW009998 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI VINIKOOR, MICHAEL JEFFREY · 2014 to 2017
$526k
FIC NIH HHS K01 TW009998NIAID NIH HHS R01 AI147727NIAID NIH HHS R01 AI148648NIAID NIH HHS R01 AI155140NIAID NIH HHS R37 AI179640NIAID NIH HHS U01 AI069924NICHD NIH HHS R01 HD085862NIH HHS U01AI069924Swiss National Science Foundation PP00P3_211025
6 · The paper itself

Abstract

In Lusaka, Zambia, we introduced liver fine-needle aspiration biopsy (FNAB) into a research cohort of adults with treatment-naive chronic hepatitis B virus (HBV) infection, with and without human immunodeficiency virus (HIV) coinfection, as well as with acute HBV infection. From 117 enrollment and 47 longitudinal FNABs (at 1-year follow-up), we established participant acceptability and safety. We also demonstrated the quality of the material through single-cell RNA sequencing of selected enrollment FNAs, which revealed a range of immune cells. This approach can drive new insights into HBV immunology, informing cure strategies, and can improve our understanding of HBV natural history in Africa.

Indexed as

Hepatitis B, ChronicHepatitis B virusHIV InfectionsLiverSingle-Cell AnalysisAdultBiopsy, Fine-NeedleCoinfectionFemaleHepatitis BHumansLongitudinal StudiesMaleMiddle AgedYoung AdultZambiaAfricahepatitis B virushuman immunodeficiency virusliver fine-needle aspiration biopsysingle-cell RNA sequencing

Identifiers

PMID38332750
PMCPMC11565906
OpenAlexW4391691649

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.