Evidence map›Paper›PMID 38332353›Full record

ArticleNature cell biology2024

Mitochondrial DNA replication stress triggers a pro-inflammatory endosomal pathway of nucleoid disposal.

Laura E Newman, Sammy Weiser Novak, Gladys R Rojas, Nimesha Tadepalle, Cara R Schiavon, Danielle A Grotjahn, Christina G Towers, Marie-Ève Tremblay, Matthew P Donnelly, Sagnika Ghosh and 7 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
25.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it, 111 citations in OpenAlex.

  1. Pooled it
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  10. The MIRO1-BAX Complex Dictates Life and Death at the Mitochondrial Gate.bioRxiv : the preprint server for biology · 2026
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Laura E NewmanSalk Institute for Biological Studies, La Jolla, CA, USA.
Sammy Weiser NovakSalk Institute for Biological Studies, La Jolla, CA, USA.
Gladys R RojasSalk Institute for Biological Studies, La Jolla, CA, USA.
Nimesha TadepalleSalk Institute for Biological Studies, La Jolla, CA, USA.
Cara R SchiavonSalk Institute for Biological Studies, La Jolla, CA, USA.
Danielle A GrotjahnThe Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-5908-7882
Christina G TowersSalk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-0523-8096
Marie-Ève TremblayUniversity of Victoria, Victoria, British Columbia, Canada.ORCID http://orcid.org/0000-0003-2863-9626
Matthew P DonnellySalk Institute for Biological Studies, La Jolla, CA, USA.
Sagnika GhoshSalk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2883-7008
Michaela MedinaThe Scripps Research Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0001-6346-5137
Sienna RochaSalk Institute for Biological Studies, La Jolla, CA, USA.
Ricardo Rodriguez-EnriquezSalk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-1997-0608
Joshua A ChevezDivision of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Ian LemersalLa Jolla Institute for Immunology, La Jolla, CA, USA.
Uri ManorSalk Institute for Biological Studies, La Jolla, CA, USA. uri@ucsd.edu.ORCID http://orcid.org/0000-0002-9802-1955
Gerald S ShadelSalk Institute for Biological Studies, La Jolla, CA, USA. gshadel@salk.edu.ORCID http://orcid.org/0000-0003-2899-8717
Salk Institute for Biological Studies · USScripps Research Institute · USLa Jolla Institute for Immunology · USUniversity of California San Diego · USUniversity of Victoria · CA

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Reuben Shaw · 1985 to 2026
$82.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007198 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHI, NEIL C, INSEL, PAUL A · 1985 to 2024
$29.3M
San Diego Nathan Shock CenterP30AG068635 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHADEL, GERALD · 2020 to 2024
$6.0M
Mitochondrial DNA Stress Activation of Interferon Signaling and Lupus PathologyR01AR069876 · NIAMS · YALE UNIVERSITY · PI SHADEL, GERALD · 2017 to 2021
$2.1M
Therapeutic Targeting of Autophagy-Dependent CancerR00CA245187 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI TOWERS, CHRISTINA G · 2021 to 2023
$816k
BD FACSAria Fusion for Flow Cytometry Core FacilityS10OD023689 · OD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI ZHENG, YE · 2018 to 2018
$530k
Role of mitochondrial/ER contacts in the regulation of mtDNA release from mitochondria, innate immune signaling, and responses to viral infectionR00GM141482 · NIGMS · UNIVERSITY OF VIRGINIA · PI NEWMAN, LAURA ELIZABETH · 2024 to 2024
$249k
The role of mitochondrial/ER contacts in the regulation of mtDNA release from mitochondria, innate immune signaling, and responses to viral infectionK99GM141482 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI NEWMAN, LAURA ELIZABETH · 2021 to 2022
$200k
Actin-mediated regulation of organelle dynamics in Charcot-Marie-Tooth diseaseF32GM137580 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SCHIAVON, CARA RAE · 2021 to 2022
$136k
NCI NIH HHS P30 CA014195NCI NIH HHS R00 CA245187NIAMS NIH HHS R01 AR069876NIA NIH HHS P30 AG068635NIGMS NIH HHS F32 GM137580NIGMS NIH HHS K99 GM141482NIGMS NIH HHS R00 GM141482NIGMS NIH HHS T32 GM007198NIH HHS S10 OD023689
6 · The paper itself

Abstract

Mitochondrial DNA (mtDNA) encodes essential subunits of the oxidative phosphorylation system, but is also a major damage-associated molecular pattern (DAMP) that engages innate immune sensors when released into the cytoplasm, outside of cells or into circulation. As a DAMP, mtDNA not only contributes to anti-viral resistance, but also causes pathogenic inflammation in many disease contexts. Cells experiencing mtDNA stress caused by depletion of the mtDNA-packaging protein, transcription factor A, mitochondrial (TFAM) or during herpes simplex virus-1 infection exhibit elongated mitochondria, enlargement of nucleoids (mtDNA-protein complexes) and activation of cGAS-STING innate immune signalling via mtDNA released into the cytoplasm. However, the relationship among aberrant mitochondria and nucleoid dynamics, mtDNA release and cGAS-STING activation remains unclear. Here we show that, under a variety of mtDNA replication stress conditions and during herpes simplex virus-1 infection, enlarged nucleoids that remain bound to TFAM exit mitochondria. Enlarged nucleoids arise from mtDNA experiencing replication stress, which causes nucleoid clustering via a block in mitochondrial fission at a stage when endoplasmic reticulum actin polymerization would normally commence, defining a fission checkpoint that ensures mtDNA has completed replication and is competent for segregation into daughter mitochondria. Chronic engagement of this checkpoint results in enlarged nucleoids trafficking into early and then late endosomes for disposal. Endosomal rupture during transit through this endosomal pathway ultimately causes mtDNA-mediated cGAS-STING activation. Thus, we propose that replication-incompetent nucleoids are selectively eliminated by an adaptive mitochondria-endosomal quality control pathway that is prone to innate immune system activation, which might represent a therapeutic target to prevent mtDNA-mediated inflammation during viral infection and other pathogenic states.

Indexed as

DNA-Binding ProteinsDNA, MitochondrialDNA ReplicationEndosomesHumansInflammationMitochondrial ProteinsNucleotidyltransferasesDNA-Binding ProteinsDNA, MitochondrialMitochondrial ProteinsNucleotidyltransferases

Identifiers

PMID38332353
PMCPMC11026068
OpenAlexW4391652645

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.