Evidence map›Paper›PMID 38331970›Full record

ArticleScientific reports2024

Engineered ice-binding protein (FfIBP) shows increased stability and resistance to thermal and chemical denaturation compared to the wildtype.

Yewon Nam, Dieu Linh Nguyen, Trang Hoang, Bogeun Kim, Jun Hyuck Lee, Hackwon Do

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yewon NamResearch Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon, 21990, Republic of Korea.
Dieu Linh NguyenDivision of Life Sciences, Korea Polar Research Institute, Incheon, 21990, Republic of Korea.
Trang HoangResearch Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon, 21990, Republic of Korea.
Bogeun KimResearch Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon, 21990, Republic of Korea.
Jun Hyuck LeeResearch Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon, 21990, Republic of Korea. junhyucklee@kopri.re.kr.
Hackwon DoResearch Unit of Cryogenic Novel Material, Korea Polar Research Institute, Incheon, 21990, Republic of Korea. hackwondo@kopri.re.kr.
Korea Polar Research Institute · KRKorea University of Science and Technology · KR

Funding

Korea Polar Research Institute PE24120Ministry of Oceans and Fisheries, Korea KIMST 20200610
6 · The paper itself

Abstract

Many polar organisms produce antifreeze proteins (AFPs) and ice-binding proteins (IBPs) to protect themselves from ice formation. As IBPs protect cells and organisms, the potential of IBPs as natural or biological cryoprotective agents (CPAs) for the cryopreservation of animal cells, such as oocytes and sperm, has been explored to increase the recovery rate after freezing-thawing. However, only a few IBPs have shown success in cryopreservation, possibly because of the presence of protein denaturants, such as dimethyl sulfoxide, alcohols, or ethylene glycol, in freezing buffer conditions, rendering the IBPs inactive. Therefore, we investigated the thermal and chemical stability of FfIBP isolated from Antarctic bacteria to assess its suitability as a protein-based impermeable cryoprotectant. A molecular dynamics (MD) simulation identified and generated stability-enhanced mutants (FfIBP_CC1). The results indicated that FfIBP_CC1 displayed enhanced resistance to denaturation at elevated temperatures and chemical concentrations, compared to wildtype FfIBP, and was functional in known CPAs while retaining ice-binding properties. Given that FfIBP shares an overall structure similar to DUF3494 IBPs, which are recognized as the most widespread IBP family, these findings provide important structural information on thermal and chemical stability, which could potentially be applied to other DUF3494 IBPs for future protein engineering.

Indexed as

Carrier ProteinsIceAnimalsAntifreeze ProteinsBacteriaCryoprotective AgentsFreezingMaleSemenAntifreeze ProteinsCarrier ProteinsCryoprotective AgentsIceIce-binding protein, Antifreeze protein, Cryopreservation, Chemical stability, Cold denaturation, DUF3494, Ice recrystallization inhibition, Thermal hysteresis

Identifiers

PMID38331970
PMCPMC10853241
OpenAlexW4391645873

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.