Evidence map›Paper›PMID 38331722›Full record

ArticleBMC genomics2024

Passionfruit Genomic Database (PGD): a comprehensive resource for passionfruit genomics.

Chaowei Yu, Peng Wang, Shengjie Zhang, Jindian Liu, Yingyin Cheng, Songbai Zhang, Zujian Wu

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chaowei YuMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River (Co-Construction By Ministry and Province), Yangtze University, Jingzhou, 434025, China.
Peng WangMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River (Co-Construction By Ministry and Province), Yangtze University, Jingzhou, 434025, China.
Shengjie ZhangInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Jindian LiuInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Yingyin ChengInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
Songbai ZhangMARA Key Laboratory of Sustainable Crop Production in the Middle Reaches of the Yangtze River (Co-Construction By Ministry and Province), Yangtze University, Jingzhou, 434025, China. yangtze2008@126.com.
Zujian WuInstitute of Plant Virology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. wuzujian@fafu.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Passionfruit (Passiflora edulis) is a significant fruit crop in the commercial sector, owing to its high nutritional and medicinal value. The advent of high-throughput genomics sequencing technology has led to the publication of a vast amount of passionfruit omics data, encompassing complete genome sequences and transcriptome data under diverse stress conditions. To facilitate the efficient integration, storage, and analysis of these large-scale datasets, and to enable researchers to effectively utilize these omics data, we developed the first passionfruit genome database (PGD). The PGD platform comprises a diverse range of functional modules, including a genome browser, search function, heatmap, gene expression patterns, various tools, sequence alignment, and batch download, thereby providing a user-friendly interface. Additionally, supplementary practical tools have been developed for the PGD, such as gene family analysis tools, gene ontology (GO) terms, a pathway enrichment analysis, and other data analysis and mining tools, which enhance the data's utilization value. By leveraging the database's robust scalability, the intention is to continue to collect and integrate passionfruit omics data in the PGD, providing comprehensive and in-depth support for passionfruit research. The PGD is freely accessible via http://passionfruit.com.cn .

Indexed as

PassifloraPreimplantation DiagnosisDatabases, GeneticFemaleGenomeGenomicsHumansPregnancySequence AnalysisFunctional genomicsPassiflora edulisPassionfruit genomic databaseTranscriptomicsWeb server

Identifiers

PMID38331722
PMCPMC10851451

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.