Evidence map›Paper›PMID 38329563›Full record

ArticleMolecular biology reports2024

Development of novel SSR markers and validation by assessing the genetic diversity of endangered Deccan mahseer, Tor khudree.

Gargee Das, Sofia Priyadarsani Das, Amrita Bit, Lakshman Sahoo, Subrat Kumar Swain, Channaveer Huchappa Raghavendra, N P Krishnaprasoon, Sangram Ketan Sahoo, Paramananda Das

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Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

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5 · Who and what money

Authors and funding

9 authors.

Gargee DasFish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, 751002, India.
Sofia Priyadarsani DasDepartment of Aquaculture, National Taiwan Ocean University, Keelung City, 202, Taiwan.
Amrita BitFish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, 751002, India.
Lakshman SahooFish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, 751002, India.
Subrat Kumar SwainInstitute of Medical Sciences & SUM Hospital, Siksha O Anusandhan University, Bhubaneswar, India.
Channaveer Huchappa RaghavendraICAR- Central Institute of Freshwater Aquaculture, RRC, Bengaluru, India.
N P KrishnaprasoonPMFGR Centre of ICAR-National Bureau of Fish Genetic Resources, CMFRI Campus, Kochi, India.
Sangram Ketan SahooFish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, 751002, India.
Paramananda DasFish Genetics and Biotechnology Division, ICAR-Central Institute of Freshwater Aquaculture, Kausalyaganga, Bhubaneswar, 751002, India. pdas77@hotmail.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe Deccan mahseer, Tor khudree (Sykes, 1839) is a potential game and food fish species belonging to the family cyprinidae and is categorized as endangered. Its distribution is restricted to southern part of India, specifically to Peninsular Rivers. This study is first to assess the genetic diversity and differentiation in Tor khudree by developing novel simple sequence repeat (SSR) markers. METHODS AND

resultsLow depth next generation sequencing followed by sequence analysis in MISA software identified 187,649 SSRs. The novel fourteen validated SSR loci were used for population genetic analysis. All of the SSR loci were highly informative with mean PIC > 0.5. High mean allelic richness (9.29) observed heterozygosity (0.98) and expected heterozygosity (0.79) were observed across the loci. However, genetic differentiation was low but significant (0.052). Negative F

conclusionsThe results from the present study including the highly polymorphic markers developed would be a useful resource for further research on population genetics and conservation genetics of the species.

Indexed as

CyprinidaeAllelesAnimalsFoodGenetic VariationMicrosatellite RepeatsDeccan mahseer. Next generation sequencing. SSR. Population diversity

Identifiers

PMID38329563

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