Evidence map›Paper›PMID 38329355›Full record

ArticleMicrobiology resource announcements2024

Whole community shotgun metagenomes of two biological soil crust types from the Mojave Desert.

Thuy M Nguyen, Nuttapon Pombubpa, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Simon Roux, Krishnaveni Palaniappan, Neha Varghese, Supratim Mukherjee and 11 more

Abstract read
In one paragraph

Article in Microbiology resource announcements, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Thuy M Nguyen *Department of Biology and Center for Biodiversity and Conservation Research, University of Mississippi, University, Mississippi, USA.ORCID 0000-0002-0164-5340
Nuttapon Pombubpa *Department of Microbiology and Plant Pathology, University of California, Riverside, California, USA.ORCID 0000-0003-3385-5331
Marcel HuntemannUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-1284-3748
Alicia ClumUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-5004-3362
Brian FosterUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Bryce FosterUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Simon RouxUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-5831-5895
Krishnaveni PalaniappanUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Neha VargheseUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0003-0580-0675
Supratim MukherjeeUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-6322-2271
T B K ReddyUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-0871-5567
Chris DaumUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0003-3895-5892
Alex CopelandUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-3971-5439
I-Min A ChenUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0003-2026-9798
Natalia N IvanovaUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-5802-9485
Nikos C KyrpidesUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-6131-0462
Miranda Harmon-SmithUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-3980-1820
Emiley A Eloe-FadroshUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-8162-1276
Nicole PietrasiakSchool of Life Sciences, University of Nevada-Las Vegas, Las Vegas, Nevada, USA.ORCID 0000-0003-4636-8006
Jason E StajichDepartment of Microbiology and Plant Pathology, University of California, Riverside, California, USA.ORCID 0000-0002-7591-0020
Erik F Y HomDepartment of Biology and Center for Biodiversity and Conservation Research, University of Mississippi, University, Mississippi, USA.ORCID 0000-0003-0964-0031

Funding

Orthocoding for Spatial SequencingR56HG011231 · NHGRI · STANFORD UNIVERSITY · PI FORDYCE, POLLY MORRELL, ROHATGI, RAJAT · 2020 to 2020
$394k
Joint Genome Institute (JGI) DE-AC02-05CH11231National Energy Research Scientific Computing Center (NERSC) DE-AC02-05CH11231National Science Foundation (NSF) DEB-1541538, DEB-1846376Royal Thai Government ScholarshipU.S. Department of Agriculture (USDA) CA-R-PPA-211-5062-HU.S. Department of Energy (DOE) FICUS-50356
6 · The paper itself

Abstract

We present six whole community shotgun metagenomic sequencing data sets of two types of biological soil crusts sampled at the ecotone of the Mojave Desert and Colorado Desert in California. These data will help us understand the diversity and function of biocrust microbial communities, which are essential for desert ecosystems.

Indexed as

metagenomicssoil crusts

Identifiers

PMID38329355
PMCPMC10927660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.