Evidence map›Paper›PMID 38328173›Full record

ArticlebioRxiv : the preprint server for biology2024

Evaluating the effect of denoising submillimeter auditory fMRI data with NORDIC.

Lonike K Faes, Agustin Lage-Castellanos, Giancarlo Valente, Zidan Yu, Martijn A Cloos, Luca Vizioli, Steen Moeller, Essa Yacoub, Federico De Martino

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Lonike K FaesDepartment of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, 6200 MD, Maastricht, The Netherlands.ORCID 0000-0001-9792-6130
Agustin Lage-CastellanosDepartment of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, 6200 MD, Maastricht, The Netherlands.
Giancarlo ValenteDepartment of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, 6200 MD, Maastricht, The Netherlands.ORCID 0000-0002-4525-3509
Zidan YuCenter for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, New York University School of Medicine, New York, NY, USA.ORCID 0000-0003-3405-7227
Martijn A CloosCenter for Advanced Imaging Innovation and Research (CAI2R), Department of Radiology, New York University School of Medicine, New York, NY, USA.ORCID 0000-0002-0636-234X
Luca VizioliCenter for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN 55455, United States.
Steen MoellerCenter for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN 55455, United States.ORCID 0000-0003-1698-7260
Essa YacoubCenter for Magnetic Resonance Research, Department of Radiology, University of Minnesota, Minneapolis, MN 55455, United States.
Federico De MartinoDepartment of Cognitive Neuroscience, Faculty of Psychology and Neuroscience, Maastricht University, 6200 MD, Maastricht, The Netherlands.

Funding

TRD4 - Ultrahigh Field Engineering and SafetyP41EB027061 · NIBIB · UNIVERSITY OF MINNESOTA · PI Gregory John Metzger, KAMIL UGURBIL · 2019 to 2026
$11.7M
Computer Aided Diagnostic System for Prostate Cancer Detection Using Quantitative Multiparametric MRIR01CA241159 · NCI · UNIVERSITY OF MINNESOTA · PI METZGER, GREGORY JOHN · 2021 to 2025
$3.0M
The Neuronal Underpinnings of Non-invasive Laminar fMRIRF1MH116978 · NIMH · UNIVERSITY OF MINNESOTA · PI DEVINSKY, ORRIN, YACOUB, ESSA · 2018 to 2018
$2.9M
NCI NIH HHS R01 CA241159NIBIB NIH HHS P41 EB027061NIMH NIH HHS RF1 MH116978
6 · The paper itself

Abstract

Functional magnetic resonance imaging (fMRI) has emerged as an essential tool for exploring human brain function. Submillimeter fMRI, in particular, has emerged as a tool to study mesoscopic computations. The inherently low signal-to-noise ratio (SNR) at submillimeter resolutions warrants the use of denoising approaches tailored at reducing thermal noise - the dominant contributing noise component in high resolution fMRI. NORDIC PCA is one of such approaches, and has been benchmarked against other approaches in several applications. Here, we investigate the effects that two versions of NORDIC denoising have on auditory submillimeter data. As investigating auditory functional responses poses unique challenges, we anticipated that the benefit of this technique would be especially pronounced. Our results show that NORDIC denoising improves the detection sensitivity and the reliability of estimates in submillimeter auditory fMRI data. These effects can be explained by the reduction of the noise-induced signal variability. However, we also observed a reduction in the average response amplitude (percent signal), which may suggest that a small amount of signal was also removed. We conclude that, while evaluating the effects of the signal reduction induced by NORDIC may be necessary for each application, using NORDIC in high resolution auditory fMRI studies may be advantageous because of the large reduction in variability of the estimated responses.

Identifiers

PMID38328173
PMCPMC10849717

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.