Evidence map›Paper›PMID 38328110›Full record

ArticlebioRxiv : the preprint server for biology2024

The conformational landscape of human transthyretin revealed by cryo-EM.

Benjamin Basanta, Karina Nugroho, Nicholas L Yan, Gabriel M Kline, Evan T Powers, Felix J Tsai, Mengyu Wu, Althea Hansel-Harris, Jason S Chen, Stefano Forli and 2 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 15 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Benjamin BasantaDepartment of Integrative Structural and Computational Biology, Scripps Research; La Jolla, CA, USA.ORCID 0000-0003-1118-5269
Karina NugrohoDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID 0000-0003-1361-993X
Nicholas L YanDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID 0000-0003-4978-550X
Gabriel M KlineDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID 0000-0002-6960-1299
Evan T PowersDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID 0000-0001-8185-8487
Felix J TsaiDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID 0000-0002-3425-8697
Mengyu WuDepartment of Integrative Structural and Computational Biology, Scripps Research; La Jolla, CA, USA.ORCID 0000-0002-2248-9383
Althea Hansel-HarrisDepartment of Integrative Structural and Computational Biology, Scripps Research; La Jolla, CA, USA.ORCID 0000-0001-7064-1119
Jason S ChenAutomated Synthesis Facility, Scripps Research, La Jolla, CA 92037, USA.
Stefano ForliDepartment of Integrative Structural and Computational Biology, Scripps Research; La Jolla, CA, USA.ORCID 0000-0002-5964-7111
Jeffrey W KellyDepartment of Chemistry, Scripps Research; La Jolla, CA, USA.ORCID 0000-0001-8943-3395
Gabriel C LanderDepartment of Integrative Structural and Computational Biology, Scripps Research; La Jolla, CA, USA.ORCID 0000-0003-4921-1135
Scripps Research Institute · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Probing the Biochemical Mechanisms of Amyloid DiseaseR01DK046335 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 1998 to 2025
$8.8M
Probing the biochemical mechanism of amyloid diseaseR37DK046335 · NIDDK · SCRIPPS RESEARCH INSTITUTE, THE · PI KELLY, JEFFERY W · 2006 to 2015
$5.9M
Extending the limits of cryo-EM to better understand TTR misfolding and aggregationR21AG067594 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2020 to 2021
$488k
Development of a pipeline for parallel elucidation of protein structuresR21GM142196 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2021 to 2022
$488k
NIA NIH HHS R21 AG067594NIDDK NIH HHS R01 DK046335NIDDK NIH HHS R37 DK046335NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R21 GM142196
6 · The paper itself

Abstract

Transthyretin (TTR) is a natively tetrameric thyroxine transporter found in blood and cerebrospinal fluid whose misfolding and aggregation causes transthyretin amyloidosis. A rational drug design campaign identified the small molecule tafamidis (Vyndaqel/Vyndamax) as an effective stabilizer of the native TTR fold, and this aggregation inhibitor is regulatory agency-approved for the treatment of TTR amyloidosis. Despite 50 years of structural studies on TTR and this triumph of structure-based drug design, there remains a notable dearth of structural information available to understand ligand binding allostery and amyloidogenic TTR unfolding intermediates. We used single-particle cryo-electron microscopy (cryo-EM) to investigate the conformational landscape of this 55 kiloDalton tetramer in the absence and presence of one or two ligands, revealing inherent asymmetries in the tetrameric architecture and previously unobserved conformational states. These findings provide critical mechanistic insights into negatively cooperative ligand binding and the structural pathways responsible for TTR amyloidogenesis. This study underscores the capacity of cryo-EM to provide new insights into protein structures that have been historically considered too small to visualize and to identify pharmacological targets suppressed by the confines of the crystal lattice, opening uncharted territory in structure-based drug design.

Identifiers

PMID38328110
PMCPMC10849623
OpenAlexW4391171785

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.