Evidence map›Paper›PMID 38326509›Full record

ArticleScientific reports2024

First neurotranscriptome of adults Tambaquis (Colossoma macropomum) with characterization and differential expression between males and females.

Josy Miranda, Ivana Veneza, Charles Ferreira, Paula Santana, Italo Lutz, Carolina Furtado, Patrick Pereira, Luan Rabelo, Cristovam Guerreiro-Diniz, Mauro Melo and 3 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Josy MirandaLaboratório de Genética Aplicada, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Ivana VenezaUniversidade Federal do Oeste do Pará, Campus Monte Alegre, Av. Major Francisco Mariano - Bairro Cidade Alta, Monte Alegre, Pará, ZIP Code 68220-000, Brazil.
Charles FerreiraLaboratório de Genética Aplicada, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Paula SantanaLaboratório de Genética Aplicada, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Italo LutzLaboratório de Genética Aplicada, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Carolina FurtadoDivisão de Genética, Instituto Nacional de Câncer José de Alencar Gomes da Silva (INCA), Pr. da Cruz Vermelha, 23 - Bairro Centro, Rio de Janeiro, ZIP Code: 20230-130, Brazil.
Patrick PereiraLaboratório de Biologia Molecular e Neuroecologia, Instituto Federal de Educação, Ciência E Tecnologia Do Pará, - Campus Bragança, Rua da Escola Agrícola S/N - Bairro Vila Sinhá - Caixa Postal 72, Bragança, PA, ZIP Code: 68600-000, Brazil.
Luan RabeloLaboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Cristovam Guerreiro-DinizLaboratório de Biologia Molecular e Neuroecologia, Instituto Federal de Educação, Ciência E Tecnologia Do Pará, - Campus Bragança, Rua da Escola Agrícola S/N - Bairro Vila Sinhá - Caixa Postal 72, Bragança, PA, ZIP Code: 68600-000, Brazil.
Mauro MeloLaboratório de Biologia Molecular e Neuroecologia, Instituto Federal de Educação, Ciência E Tecnologia Do Pará, - Campus Bragança, Rua da Escola Agrícola S/N - Bairro Vila Sinhá - Caixa Postal 72, Bragança, PA, ZIP Code: 68600-000, Brazil.
Iracilda SampaioLaboratório de Genética e Biologia Molecular, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Marcelo VallinotoLaboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil.
Grazielle Evangelista-GomesLaboratório de Genética Aplicada, Instituto de Estudos Costeiros, Universidade Federal Do Pará, Al. Leandro Ribeiro S/N - Bairro Aldeia, Bragança, Pará, ZIP Code: 68600-000, Brazil. grazielle@ufpa.com.
Universidade Federal do Pará · BRInstituto Nacional do Câncer · BRUniversidade Federal do Oeste do Pará · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Tambaqui is one of the most representative Amazon fish species, being highly exploited in fisheries, aquaculture and as a research model. Nonetheless, data about functional genome are still required to evaluate reproductive and nutrition parameters as well as resistance to pathogens. The of next-generation sequencing has allows assessing the transcriptional processes in non-model species by providing comprehensive gene collections to be used as a database in further genomic applications and increased performance of captive populations. In this study, we relied on RNAseq approach to generate the first transcriptome of the telencephalon from adult males and females of Colossoma macropomum, resulting in a reference dataset for future functional studies. We retrieved 896,238 transcripts, including the identification of 267,785 contigs and 203,790 genes. From this total, 91 transcripts were differentially expressed, being 63 and 28 of them positively regulated for females and males, respectively. The functional annotation resulted in a library of 40 candidate genes for females and 20 for males. The functional enrichment classes comprised reproductive processes (GO:0,048,609; GO:0,003,006; GO:0,044,703; GO:0,032,504; GO:0,019,953) being related to sex differentiation (e.g., SAFB) and immune response (e.g., SLC2A6, AHNAK, NLRC3, NLRP3 and IgC MHC I alpha3), thus indicating that the genes in the neurotranscriptome of Tambaqui participate in sex differentiation and homeostasis of captive specimens. These data are useful to design the selection of genes related to sex determination and animal welfare in raising systems of Tambaqui.

Indexed as

CharaciformesAnimalsAquacultureFemaleFisheriesGene LibraryGenomicsMale

Identifiers

PMID38326509
PMCPMC10850070
OpenAlexW4391630649

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.