Evidence map›Paper›PMID 38324568›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Cell cycle plasticity underlies fractional resistance to palbociclib in ER+/HER2- breast tumor cells.

Tarek M Zikry, Samuel C Wolff, Jolene S Ranek, Harris M Davis, Ander Naugle, Namit Luthra, Austin A Whitman, Katarzyna M Kedziora, Wayne Stallaert, Michael R Kosorok and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  8. Spherical Manifolds Capture Drug-Induced Changes in Tumor Cell Cycle Behavior.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2025
    Article
  9. Article
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  11. APC/C prevents a noncanonical order of cyclin/CDK activity to maintain CDK4/6 inhibitor-induced arrest.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Cell cycle plasticity underlies fractional resistance to palbociclib in ER+/HER2- breast tumor cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Tarek M Zikry *Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0003-3360-249X
Samuel C Wolff *Computational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0002-3726-3459
Jolene S RanekComputational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0002-0701-0565
Harris M DavisComputational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Ander NaugleComputational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0009-0001-6409-8874
Namit LuthraComputational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Austin A WhitmanLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.
Katarzyna M KedzioraCenter for Biologic Imaging, Department of Cell Biology, University of Pittsburg, Pittsburgh, PA 15620.
Wayne StallaertDepartment of Computational and Systems Biology, University of Pittsburg, Pittsburgh, PA 15620.
Michael R KosorokDepartment of Biostatistics, Gillings School of Global Public Health, University of North Carolina, Chapel Hill, NC 27599.ORCID 0000-0002-6070-9738
Philip M SpanheimerLineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0001-8644-0178
Jeremy E PurvisComputational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599.ORCID 0000-0002-6963-0524
University of North Carolina at Chapel Hill · USPittsburg State University · US

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BENJAMIN CARLISLE CALHOUN · 1992 to 2026
$59.3M
UG Support Administrative Supplement: Computational Models of the Human Cell Cycle to Reveal Disease Mechanism and Inform TreatmentR01GM138834 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jeremy Purvis · 2020 to 2026
$2.7M
UNC Predoc Training Progr in Bioinformatics/Comp BiologyT32GM067553 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C · 2005 to 2019
$2.5M
Cell cycle paths as a framework for understanding drug resistance in tumor cell subpopulationsR01CA280482 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jeanette Gowen Cook, Michael James Emanuele · 2024 to 2026
$1.8M
Repurposing RET Inhibitors for Endocrine Resistant Breast CancerK08CA280388 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Philip M. Spanheimer · 2023 to 2026
$812k
Deep learning models to predict primitive streak formation in human developmentF31HL156464 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ZIKRY, TAREK · 2021 to 2024
$156k
Inferring Gene Regulatory Networks Governing Definitive Endoderm Differentiation from Single Cell RNA Velocity MeasurementsF31HL156433 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RANEK, JOLENE SARAH · 2021 to 2023
$82k
NCI NIH HHS K08 CA280388NCI NIH HHS P30 CA016086NCI NIH HHS P50 CA058223NCI NIH HHS R01 CA280482NHLBI NIH HHS F31 HL156433NHLBI NIH HHS F31 HL156464NIGMS NIH HHS R01 GM138834NIGMS NIH HHS T32 GM067553NIH HHS K08CA280388
6 · The paper itself

Abstract

The CDK4/6 inhibitor palbociclib blocks cell cycle progression in Estrogen receptor-positive, human epidermal growth factor 2 receptor-negative (ER+/HER2-) breast tumor cells. Despite the drug's success in improving patient outcomes, a small percentage of tumor cells continues to divide in the presence of palbociclib-a phenomenon we refer to as fractional resistance. It is critical to understand the cellular mechanisms underlying fractional resistance because the precise percentage of resistant cells in patient tissue is a strong predictor of clinical outcomes. Here, we hypothesize that fractional resistance arises from cell-to-cell differences in core cell cycle regulators that allow a subset of cells to escape CDK4/6 inhibitor therapy. We used multiplex, single-cell imaging to identify fractionally resistant cells in both cultured and primary breast tumor samples resected from patients. Resistant cells showed premature accumulation of multiple G1 regulators including E2F1, retinoblastoma protein, and CDK2, as well as enhanced sensitivity to pharmacological inhibition of CDK2 activity. Using trajectory inference approaches, we show how plasticity among cell cycle regulators gives rise to alternate cell cycle "paths" that allow individual tumor cells to escape palbociclib treatment. Understanding drivers of cell cycle plasticity, and how to eliminate resistant cell cycle paths, could lead to improved cancer therapies targeting fractionally resistant cells to improve patient outcomes.

Indexed as

Breast NeoplasmsPiperazinesPyridinesCell CycleCell DivisionCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6FemaleHumansProtein Kinase InhibitorsCyclin-Dependent Kinase 4Cyclin-Dependent Kinase 6palbociclibPiperazinesProtein Kinase InhibitorsPyridinescell cycle arrestER+/HER2− breast cancerfractional resistancesingle-cell imagingsingle-cell proteomics

Identifiers

PMID38324568
PMCPMC10873600
OpenAlexW4391594521

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.