Evidence map›Paper›PMID 38323936›Full record

ArticleThe Journal of cell biology2024

Light-sensitive phosphorylation regulates retinal IMPDH1 activity and filament assembly.

S John Calise, Audrey G O'Neill, Anika L Burrell, Miles S Dickinson, Josephine Molfino, Charlie Clarke, Joel Quispe, David Sokolov, Rubén M Buey, Justin M Kollman

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

S John CaliseDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-5146-8629
Audrey G O'NeillDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0003-3964-4236
Anika L BurrellDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6943-9570
Miles S DickinsonDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-8016-1570
Josephine MolfinoDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0009-0005-0065-0470
Charlie ClarkeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0009-0004-6173-1138
Joel QuispeDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-3693-4935
David SokolovDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0001-6774-4133
Rubén M BueyMetabolic Engineering Group, Departamento de Microbiología y Genética, Universidad de Salamanca, Campus Miguel de Unamuno, Salamanca, Spain.ORCID 0000-0003-1263-0221
Justin M KollmanDepartment of Biochemistry, University of Washington, Seattle, WA, USA.ORCID 0000-0002-0350-5827
University of Washington · USUniversidad de Salamanca · ES

Funding

TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
The Structure and Function of Metabolic FilamentsR01GM118396 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M · 2016 to 2023
$2.9M
Structure and function of metabolic enzyme assembliesR35GM149542 · NIGMS · UNIVERSITY OF WASHINGTON · PI Justin M Kollman · 2023 to 2026
$2.2M
IMPDH structure and function in retinal degenerationR21EY031546 · NEI · UNIVERSITY OF WASHINGTON · PI BROCKERHOFF, SUSAN E, KOLLMAN, JUSTIN M · 2020 to 2021
$479k
IMPDH1 structure and function in the healthy and diseased retinaF31EY030732 · NEI · UNIVERSITY OF WASHINGTON · PI BURRELL, ANIKA LAUREN · 2019 to 2021
$116k
NEI NIH HHS F31 EY030732NEI NIH HHS R21 EY031546NIGMS NIH HHS R01 GM118396NIGMS NIH HHS R35 GM149542NIGMS NIH HHS T32 GM008268NIH HHS T32GM008268
6 · The paper itself

Abstract

Inosine monophosphate dehydrogenase (IMPDH) is the rate-limiting enzyme in guanosine triphosphate (GTP) synthesis and assembles into filaments in cells, which desensitizes the enzyme to feedback inhibition and boosts nucleotide production. The vertebrate retina expresses two splice variants IMPDH1(546) and IMPDH1(595). In bovine retinas, residue S477 is preferentially phosphorylated in the dark, but the effects on IMPDH1 activity and regulation are unclear. Here, we generated phosphomimetic mutants to investigate structural and functional consequences of S477 phosphorylation. The S477D mutation resensitized both variants to GTP inhibition but only blocked assembly of IMPDH1(595) filaments. Cryo-EM structures of both variants showed that S477D specifically blocks assembly of a high-activity assembly interface, still allowing assembly of low-activity IMPDH1(546) filaments. Finally, we discovered that S477D exerts a dominant-negative effect in cells, preventing endogenous IMPDH filament assembly. By modulating the structure and higher-order assembly of IMPDH, S477 phosphorylation acts as a mechanism for downregulating retinal GTP synthesis in the dark when nucleotide turnover is decreased.

Indexed as

CytoskeletonGuanosine TriphosphateIMP DehydrogenaseRetinaAnimalsCattleNucleotidesPhosphorylationGuanosine TriphosphateIMP DehydrogenaseNucleotides

Identifiers

PMID38323936
PMCPMC10849882
OpenAlexW4391599983

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.