Evidence map›Paper›PMID 38323811›Full record

ArticleJournal of virology2024

Macrophages derived from human induced pluripotent stem cells (iPSCs) serve as a high-fidelity cellular model for investigating HIV-1, dengue, and influenza viruses.

Qing Yang, Arturo Barbachano-Guerrero, Laurence M Fairchild, Teisha J Rowland, Robin D Dowell, Mary A Allen, Cody J Warren, Sara L Sawyer

Abstract read
In one paragraph

Article in Journal of virology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Efficient replication of influenza D virus in the human airway underscores zoonotic potential.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  6. Review
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  12. Article
  13. Macrophage variants in laboratory research: most are well done, but some are RAW.Frontiers in cellular and infection microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Qing YangBioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA.ORCID 0000-0001-9053-3158
Arturo Barbachano-GuerreroBioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA.
Laurence M FairchildDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, Colorado, USA.
Teisha J RowlandDepartment of Molecular, Cellular, and Developmental Biology, University of Colorado Boulder, Boulder, Colorado, USA.
Robin D DowellBioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA.ORCID 0000-0001-7665-9985
Mary A AllenBioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA.
Cody J WarrenBioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA.ORCID 0000-0003-4101-2705
Sara L SawyerBioFrontiers Institute, University of Colorado Boulder, Boulder, Colorado, USA.ORCID 0000-0002-6965-1085

Funding

Breaking the Barrier to an HIV VaccineDP1AI175471 · NIAID · UNIVERSITY OF COLORADO · PI Sara Sawyer · 2022 to 2026
$5.5M
Hunting the HIV-1 UnicornDP1DA046108 · NIDA · UNIVERSITY OF COLORADO · PI SAWYER, SARA · 2018 to 2022
$4.5M
Characterizing Host-Virus Interactions in a New HIV Model OrganismR01OD034046 · OD · UNIVERSITY OF COLORADO · PI Sara Sawyer · 2022 to 2026
$3.6M
Function of RUNX1 in diverse Down syndrome tissuesR01HL156475 · NHLBI · UNIVERSITY OF COLORADO · PI ALLEN, MARY A · 2021 to 2023
$2.1M
Host genetic barriers to virus spilloverR01AI137011 · NIAID · UNIVERSITY OF COLORADO · PI SAWYER, SARA · 2018 to 2022
$2.1M
FACSAria Fusion Cell SorterS10OD021601 · OD · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2016 to 2016
$599k
Identifying genetic barriers to animal virus replication in human cells: Insights into zoonosisR00AI151256 · NIAID · OHIO STATE UNIVERSITY · PI WARREN, CODY JAY · 2023 to 2024
$493k
Investigating CD4 as a species-specific barrier to transmitted/founder HIV-1 infectionF32GM125442 · NIGMS · UNIVERSITY OF COLORADO · PI WARREN, CODY JAY · 2018 to 2019
$120k
Identifying genetic barriers to animal virus replication in human cells: Insights into zoonosisK99AI151256 · NIAID · UNIVERSITY OF COLORADO · PI WARREN, CODY JAY · 2021 to 2022
$118k
NHLBI NIH HHS R01 HL156475NIAID NIH HHS DP1 AI175471NIAID NIH HHS K99 AI151256NIAID NIH HHS R00 AI151256NIAID NIH HHS R01 AI137011NIDA NIH HHS DP1 DA046108NIGMS NIH HHS F32 GM125442NIH HHS R01 OD034046NIH HHS S10 OD021601
6 · The paper itself

Abstract

Macrophages are important target cells for diverse viruses and thus represent a valuable system for studying virus biology. Isolation of primary human macrophages is done by culture of dissociated tissues or from differentiated blood monocytes, but these methods are both time consuming and result in low numbers of recovered macrophages. Here, we explore whether macrophages derived from human induced pluripotent stem cells (iPSCs)-which proliferate indefinitely and potentially provide unlimited starting material-could serve as a faithful model system for studying virus biology. Human iPSC-derived monocytes were differentiated into macrophages and then infected with HIV-1, dengue virus, or influenza virus as model human viruses. We show that iPSC-derived macrophages support the replication of these viruses with kinetics and phenotypes similar to human blood monocyte-derived macrophages. These iPSC-derived macrophages were virtually indistinguishable from human blood monocyte-derived macrophages based on surface marker expression (flow cytometry), transcriptomics (RNA sequencing), and chromatin accessibility profiling. iPSC lines were additionally generated from non-human primate (chimpanzee) fibroblasts. When challenged with dengue virus, human and chimpanzee iPSC-derived macrophages show differential susceptibility to infection, thus providing a valuable resource for studying the species-tropism of viruses. We also show that blood- and iPSC-derived macrophages both restrict influenza virus at a late stage of the virus lifecycle. Collectively, our results substantiate iPSC-derived macrophages as an alternative to blood monocyte-derived macrophages for the study of virus biology. IMPORTANCE: Macrophages have complex relationships with viruses: while macrophages aid in the removal of pathogenic viruses from the body, macrophages are also manipulated by some viruses to serve as vessels for viral replication, dissemination, and long-term persistence. Here, we show that iPSC-derived macrophages are an excellent model that can be exploited in virology.

Indexed as

Dengue VirusHIV-1Induced Pluripotent Stem CellsMacrophagesModels, BiologicalOrthomyxoviridaeVirologyAnimalsBiomarkersCell DifferentiationChromatin Assembly and DisassemblyFibroblastsFlow CytometryGene Expression ProfilingHumansMonocytesBiomarkersATACseqdengue virushuman immunodeficiency virusinduced pluripotent stem cellsinfluenza virusiPSC-derived macrophagesmacrophagesRNAseq

Identifiers

PMID38323811
PMCPMC10949493

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.