Evidence map›Paper›PMID 38321114›Full record

ArticleNature biotechnology2024

Efficient prime editing in two-cell mouse embryos using PEmbryo.

Rebecca P Kim-Yip, Ryan McNulty, Bradley Joyce, Antonio Mollica, Peter J Chen, Purnima Ravisankar, Benjamin K Law, David R Liu, Jared E Toettcher, Evgueni A Ivakine and 2 more

Abstract read
In one paragraph

Article in Nature biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. bioRxiv : the preprint server for biology · 2026
    Article
  4. Single-nucleotide RNA mCell reports · 2026
    Article
  5. Article
  6. Review
  7. A primer on prime: A prime editing update from advances to first-in-human trial.Molecular therapy : the journal of the American Society of Gene Therapy · 2026
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Advancing Precision Medicine: Recent Innovations in Gene Editing Technologies.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rebecca P Kim-Yip *Department of Molecular Biology, Princeton University, Princeton, NJ, USA.
Ryan McNulty *Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Bradley JoyceDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
Antonio MollicaGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.
Peter J ChenMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-1094-7180
Purnima RavisankarLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Benjamin K LawDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
David R LiuMerkin Institute of Transformative Technologies in Healthcare, Broad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-9943-7557
Jared E ToettcherDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-1546-4030
Evgueni A IvakineGenetics and Genome Biology Program, The Hospital for Sick Children, Toronto, ON, Canada.ORCID http://orcid.org/0000-0003-2132-4699
Eszter PosfaiDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA. eposfai@princeton.edu.ORCID http://orcid.org/0000-0002-4871-6652
Britt AdamsonDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA. badamson@princeton.edu.ORCID http://orcid.org/0000-0002-9451-5819

Funding

TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Tracie Saunders · 1997 to 2026
$94.5M
Center for Genomic Editing and Recording: Development and Application of Next-Generation Genome and Epigenome Editing Methods to Advance the Study and Treatment of Human DiseaseRM1HG009490 · NHGRI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Brittany S. Adamson, Martin Joseph Ankrah Aryee · 2017 to 2026
$22.7M
Quantitavie and Computational Biology Graduate ProgramT32HG003284 · NHGRI · PRINCETON UNIVERSITY · PI Joshua Michael Akey, Stanislav Y. Shvartsman · 2004 to 2026
$9.9M
Integrating Chemistry and Evolution to Illuminate Biology and Enable Novel TherapeuticsR35GM118062 · NIGMS · HARVARD UNIVERSITY · PI LIU, DAVID R · 2016 to 2025
$6.4M
ePACE: automation platforms for adaptable and scalable continuous evolution of biomolecules with therapeutic potentialR01EB027793 · NIBIB · BROAD INSTITUTE, INC. · PI Ahmad Samir Khalil, DAVID R LIU · 2019 to 2026
$6.1M
Control of the 4D chromatin landscape underlying gene activity during developmentU01DK127429 · NIDDK · PRINCETON UNIVERSITY · PI GREGOR, THOMAS, LEVINE, MICHAEL STEVEN · 2020 to 2024
$3.2M
Mapping the DNA damage response in human cells with high-resolution functional genomicsR35GM138167 · NIGMS · PRINCETON UNIVERSITY · PI Brittany S. Adamson · 2020 to 2026
$2.4M
Expanding the Scope of Base EditingU01AI142756 · NIAID · BROAD INSTITUTE, INC. · PI LIU, DAVID R · 2018 to 2022
$2.1M
NRSA TrainingTL1TR003019 · NCATS · RUTGERS BIOMEDICAL/HEALTH SCIENCES-RBHS · PI SCOTTO, KATHLEEN W. · 2019 to 2023
$1.9M
Mechanisms of epiblast and primitive endoderm segregationR01HD110577 · NICHD · PRINCETON UNIVERSITY · PI Eszter Posfai · 2023 to 2026
$1.9M
A new class of biosensors for detecting signaling dynamics without live-cell microscopyR01GM144362 · NIGMS · PRINCETON UNIVERSITY · PI TOETTCHER, JARED E · 2022 to 2025
$1.3M
NCATS NIH HHS TL1 TR003019NCI NIH HHS P30 CA072720NHGRI NIH HHS RM1 HG009490NHGRI NIH HHS T32 HG003284NIAID NIH HHS U01 AI142756NIBIB NIH HHS R01 EB027793NICHD NIH HHS R01 HD110577NIDDK NIH HHS U01 DK127429NIGMS NIH HHS R01 GM144362NIGMS NIH HHS R35 GM118062NIGMS NIH HHS R35 GM138167
6 · The paper itself

Abstract

Using transient inhibition of DNA mismatch repair during a permissive stage of development, we demonstrate highly efficient prime editing of mouse embryos with few unwanted, local byproducts (average 58% precise edit frequency, 0.5% on-target error frequency across 13 substitution edits at 8 sites), enabling same-generation phenotyping of founders. Whole-genome sequencing reveals that mismatch repair inhibition increases off-target indels at low-complexity regions in the genome without any obvious phenotype in mice.

Indexed as

Embryo, MammalianGene EditingAnimalsCRISPR-Cas SystemsDNA Mismatch RepairFemaleMice

Identifiers

PMID38321114
PMCPMC11631759

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.