Evidence map›Paper›PMID 38321021›Full record

ArticleNature communications2024

MAIVeSS: streamlined selection of antigenically matched, high-yield viruses for seasonal influenza vaccine production.

Cheng Gao, Feng Wen, Minhui Guan, Bijaya Hatuwal, Lei Li, Beatriz Praena, Cynthia Y Tang, Jieze Zhang, Feng Luo, Hang Xie and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Large language models for bioinformatics.Quantitative biology (Beijing, China) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Cheng Gao *Center for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, 65211, USA.
Feng Wen *Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Starkville, MS, 39762, USA.
Minhui GuanCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, 65211, USA.
Bijaya HatuwalCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, 65211, USA.
Lei LiDepartment of Chemistry, Georgia State University, Atlanta, GA, 30303, USA.ORCID 0000-0002-1146-0761
Beatriz PraenaCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, 65211, USA.
Cynthia Y TangCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, 65211, USA.ORCID 0000-0001-5272-7170
Jieze ZhangDepartment of Bioengineering, Rice University, Houston, TX, 77030, USA.ORCID 0000-0001-8084-6310
Feng LuoUniversity School of Computing, Clemson University, Clemson, SC, 29634, USA.ORCID 0000-0002-4813-2403
Hang XieLaboratory of Respiratory Viral Diseases, Division of Viral Products, Office of Vaccines Research and Review, Center for Biologics Evaluation and Research, US Food and Drug Administration, Silver Spring, MD, 20993, USA.ORCID 0000-0001-8318-5554
Richard WebbyDepartment of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, 63141, USA.ORCID 0000-0002-4397-7132
Yizhi Jane TaoDepartment of BioSciences, Rice University, Houston, TX, 77251, USA.
Xiu-Feng WanCenter for Influenza and Emerging Infectious Diseases, University of Missouri, Columbia, MO, 65211, USA. wanx@missouri.edu.ORCID 0000-0003-2629-9234

Funding

Use of Clinical Samples to Identify Influenza Virus Antigenic VariantsR01AI147640 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI WAN, XIUFENG HENRY · 2019 to 2024
$2.8M
Genome Based Influenza Vaccine Strain Selection using Machine LearningR01AI116744 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI WAN, XIUFENG HENRY · 2015 to 2019
$1.9M
Influenza host specific glycan motif identification through systems biologyR21AI144433 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI WAN, XIUFENG HENRY · 2020 to 2021
$440k
Evolution, transmission, and clinical impacts of SARS-CoV-2 variants among urban and rural populationsF30AI172230 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI TANG, CYNTHIA Y · 2022 to 2023
$65k
NIAID NIH HHS F30 AI172230NIAID NIH HHS R01 AI116744NIAID NIH HHS R01 AI147640NIAID NIH HHS R21 AI144433
6 · The paper itself

Abstract

Vaccines are the main pharmaceutical intervention used against the global public health threat posed by influenza viruses. Timely selection of optimal seed viruses with matched antigenicity between vaccine antigen and circulating viruses and with high yield underscore vaccine efficacy and supply, respectively. Current methods for selecting influenza seed vaccines are labor intensive and time-consuming. Here, we report the Machine-learning Assisted Influenza VaccinE Strain Selection framework, MAIVeSS, that enables streamlined selection of naturally circulating, antigenically matched, and high-yield influenza vaccine strains directly from clinical samples by using molecular signatures of antigenicity and yield to support optimal candidate vaccine virus selection. We apply our framework on publicly available sequences to select A(H1N1)pdm09 vaccine candidates and experimentally confirm that these candidates have optimal antigenicity and growth in cells and eggs. Our framework can potentially reduce the optimal vaccine candidate selection time from months to days and thus facilitate timely supply of seasonal vaccines.

Indexed as

Influenza A Virus, H1N1 SubtypeInfluenza, HumanInfluenza VaccinesOrthomyxoviridae InfectionsHumansSeasonsInfluenza Vaccines

Identifiers

PMID38321021
PMCPMC10847134

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.