Evidence map›Paper›PMID 38319965›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Virus-derived circular RNAs populate hepatitis C virus-infected cells.

Qian M Cao, Pakpoom Boonchuen, Tzu-Chun Chen, Shaohua Lei, Kunlaya Somboonwiwat, Peter Sarnow

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Epigenetic Mechanisms Involved in Hcv Infection and Human HCC.International journal of molecular sciences · 2025
    Review
  7. Article
  8. Review
  9. Roles and Applications of Circular RNA in Virus Infection.International journal of molecular sciences · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Circular RNAs from linear viral RNA genomes: A distinct dimension in the virus world.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Qian M CaoDepartment of Microbiology & Immunology, School of Medicine, Stanford University, Stanford, CA 94305.
Pakpoom BoonchuenSchool of Biotechnology, Institute of Agricultural Technology, Suranaree University of Technology, Mueang Nakhon Ratchasima 30000, Thailand.
Tzu-Chun ChenDepartment of Microbiology & Immunology, School of Medicine, Stanford University, Stanford, CA 94305.
Shaohua LeiCenter of Excellence for Leukemia Studies, Department of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105.
Kunlaya SomboonwiwatDepartment of Biochemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand.
Peter SarnowDepartment of Microbiology & Immunology, School of Medicine, Stanford University, Stanford, CA 94305.ORCID 0000-0002-2043-2770

Funding

Roles for microRNA-122 in hepatitis C virus RNA amplificationR01AI069000 · NIAID · STANFORD UNIVERSITY · PI SARNOW, PETER · 2006 to 2022
$6.2M
Roles for hepatitis C virus-derived circular RNAs in infected cellsR21AI151715 · NIAID · STANFORD UNIVERSITY · PI SARNOW, PETER · 2021 to 2022
$433k
NIAID NIH HHS R01 AI069000NIAID NIH HHS R21 AI151715
6 · The paper itself

Abstract

It is known that pre-mRNAs in eukaryotic cells can be processed to circular RNAs by a backsplicing mechanism. Circular RNAs have great stability and can sequester proteins or small RNAs to exert functions on cellular pathways. Because viruses often exploit host pathways, we explored whether the RNA genome of the cytoplasmic hepatitis C virus is processed to yield virus-derived circRNAs (vcircRNAs). Computational analyses of RNA-seq experiments predicted that the viral RNA genome is fragmented to generate hundreds of vcircRNAs. More than a dozen of them were experimentally verified by rolling-circle amplification. VcircRNAs that contained the viral internal ribosome entry site were found to be translated into proteins that displayed proviral functions. Furthermore, two highly abundant, nontranslated vcircRNAs were shown to enhance viral RNA abundance. These findings argue that novel vcircRNA molecules modulate viral amplification in cells infected by a cytoplasmic RNA virus.

Indexed as

Hepatitis CRNA, CircularHepacivirusHumansProvirusesRNA, ViralRNA, CircularRNA, Viralcircular RNAshepatitis C virustranslation

Identifiers

PMID38319965
PMCPMC10873615

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.