Evidence map›Paper›PMID 38319963›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

DNA hypomethylation ameliorates erosive inflammatory arthritis by modulating interferon regulatory factor-8.

Gaurav Swarnkar, Nicholas P Semenkovich, Manoj Arra, Dorothy K Mims, Syeda Kanwal Naqvi, Timothy Peterson, Gabriel Mbalaviele, Chia-Lung Wu, Yousef Abu-Amer

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Review
  3. Propagation of monocyte exhaustion memory and underlying mechanisms.Cell communication and signaling : CCS · 2025
    Article
  4. Review
  5. DNA hypomethylation ameliorates erosive inflammatory arthritis by modulating interferon regulatory factor-8.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Gaurav SwarnkarDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0001-6052-4971
Nicholas P SemenkovichDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0001-5266-6734
Manoj ArraDepartment of Emergency Medicine, Washington University School of Medicine, St. Louis, MO 63110.
Dorothy K MimsDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110.
Syeda Kanwal NaqviDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0002-0618-6649
Timothy PetersonDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.
Gabriel MbalavieleDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0003-4660-0952
Chia-Lung WuDepartment of Orthopedics and Physical Performance, University of Rochester, Rochester, NY 14642.ORCID 0000-0001-9598-7036
Yousef Abu-AmerDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0002-5890-5086
Washington University in St. Louis · USUniversity of Rochester · US

Funding

DIABETES &RELATED METABOLIC DISEASEST32DK007120 · NIDDK · WASHINGTON UNIVERSITY · PI MARCO COLONNA, Maria Sara Remedi · 1986 to 2026
$15.7M
Resource Based Center for Musculoskeletal Biology and Medicine (Overall Application)P30AR074992 · NIAMS · WASHINGTON UNIVERSITY · PI DEBORAH J VEIS · 2019 to 2026
$6.8M
Differential Inflammasome Regulation in the pathogenesis of S. aureus osteomyelitisR01AI161022 · NIAID · WASHINGTON UNIVERSITY · PI CASSAT, JAMES E, MBALAVIELE, GABRIEL · 2021 to 2025
$3.4M
Molecular pathways of calcium pyrophosphate deposition diseaseR01AG077732 · NIA · MEDICAL COLLEGE OF WISCONSIN · PI Gabriel Mbalaviele, Ann K Rosenthal · 2022 to 2026
$2.4M
Regulation of Osteoclastogenesis and Inflammatory OsteolysisR01AR082192 · NIAMS · WASHINGTON UNIVERSITY · PI Yousef Abu-Amer · 2023 to 2026
$1.9M
Role of gasdermin D in bone resorptionR01AR076758 · NIAMS · WASHINGTON UNIVERSITY · PI MBALAVIELE, GABRIEL · 2020 to 2024
$1.9M
Novel insulin-sensitizing NASH/diabetes drugs.R42DK121652 · NIDDK · BIOIO, LLC · PI FINCK, BRIAN N, PETERSON, TIMOTHY R · 2019 to 2022
$1.7M
Mechanisms of Physiologic and Pathologic OsteoclastogenesisR01AR072623 · NIAMS · WASHINGTON UNIVERSITY · PI ABU-AMER, YOUSEF · 2018 to 2022
$1.7M
Epigenetic Regulation of Chondrogenesis and Cartilage DevelopmentR00AR075899 · NIAMS · UNIVERSITY OF ROCHESTER · PI WU, CHIA-LUNG · 2021 to 2023
$1.1M
Cabinet microCT System for Musculoskeletal Specimen ImagingS10OD028573 · OD · WASHINGTON UNIVERSITY · PI SILVA, MATTHEW J · 2020 to 2020
$407k
Drug target identification using CRISPRi/a screeningR41GM137625 · NIGMS · BIOIO, LLC · PI GILBERT, LUKE, PETERSON, TIMOTHY R · 2020 to 2020
$224k
Epigenetic Regulation of Chondrogenesis and Cartilage DevelopmentK99AR075899 · NIAMS · WASHINGTON UNIVERSITY · PI WU, CHIA-LUNG · 2019 to 2020
$180k
NIAID NIH HHS R01 AI161022NIAMS NIH HHS K99 AR075899NIAMS NIH HHS P30 AR074992NIAMS NIH HHS R00 AR075899NIAMS NIH HHS R01 AR072623NIAMS NIH HHS R01 AR076758NIAMS NIH HHS R01 AR082192NIA NIH HHS R01 AG077732NIDDK NIH HHS R42 DK121652NIDDK NIH HHS T32 DK007120NIGMS NIH HHS R41 GM137625NIH HHS S10 OD028573
6 · The paper itself

Abstract

Epigenetic regulation plays a crucial role in the pathogenesis of autoimmune diseases such as inflammatory arthritis. DNA hypomethylating agents, such as decitabine (DAC), have been shown to dampen inflammation and restore immune homeostasis. In the present study, we demonstrate that DAC elicits potent anti-inflammatory effects and attenuates disease symptoms in several animal models of arthritis. Transcriptomic and epigenomic profiling show that DAC-mediated hypomethylation regulates a wide range of cell types in arthritis, altering the differentiation trajectories of anti-inflammatory macrophage populations, regulatory T cells, and tissue-protective synovial fibroblasts (SFs). Mechanistically, DAC-mediated demethylation of intragenic 5'-Cytosine phosphate Guanine-3' (CpG) islands of the transcription factor Irf8 (interferon regulatory factor 8) induced its re-expression and promoted its repressor activity. As a result, DAC restored joint homeostasis by resetting the transcriptomic signature of negative regulators of inflammation in synovial macrophages (MerTK, Trem2, and Cx3cr1), T

Indexed as

ArthritisAzacitidineAnimalsAnti-Inflammatory AgentsDecitabineDNA MethylationEpigenesis, GeneticInflammationInterferon Regulatory Factor-8Interferon Regulatory FactorsMembrane GlycoproteinsMiceReceptors, ImmunologicAnti-Inflammatory AgentsAzacitidineDecitabineInterferon Regulatory Factor-8Interferon Regulatory FactorsMembrane GlycoproteinsReceptors, ImmunologicTrem2 protein, mousearthritisdecitabineIrf8methylationosteolysis

Identifiers

PMID38319963
PMCPMC10873594
OpenAlexW4391578331

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.