Evidence map›Paper›PMID 38319941›Full record

ArticlePloS one2024

Characterization of spatio-temporal dynamics of the constrained network of the filamentous fungus Podospora anserina using a geomatics-based approach.

Clara Ledoux, Cécilia Bobée, Éva Cabet, Pascal David, Frédéric Filaine, Sabrina Hachimi, Christophe Lalanne, Gwenaël Ruprich-Robert, Éric Herbert, Florence Chapeland-Leclerc

Abstract read
In one paragraph

Article in PloS one, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Clara LedouxCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Cécilia BobéeCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Éva CabetCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Pascal DavidCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Frédéric FilaineCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Sabrina HachimiCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Christophe LalanneCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Gwenaël Ruprich-RobertCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Éric HerbertCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.
Florence Chapeland-LeclercCNRS, UMR 8236 - LIED, Université Paris Cité, Paris, France.ORCID 0000-0002-6672-5501

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In their natural environment, fungi are subjected to a wide variety of environmental stresses which they must cope with by constantly adapting the architecture of their growing network. In this work, our objective was to finely characterize the thallus development of the filamentous fungus Podospora anserina subjected to different constraints that are simple to implement in vitro and that can be considered as relevant environmental stresses, such as a nutrient-poor environment or non-optimal temperatures. At the Petri dish scale, the observations showed that the fungal thallus is differentially affected (thallus diameter, mycelium aspect) according to the stresses but these observations remain qualitative. At the hyphal scale, we showed that the extraction of the usual quantities (i.e. apex, node, length) does not allow to distinguish the different thallus under stress, these quantities being globally affected by the application of a stress in comparison with a thallus having grown under optimal conditions. Thanks to an original geomatics-based approach based on the use of automatized Geographic Information System (GIS) tools, we were able to produce maps and metrics characterizing the growth dynamics of the networks and then to highlight some very different dynamics of network densification according to the applied stresses. The fungal thallus is then considered as a map and we are no longer interested in the quantity of material (hyphae) produced but in the empty spaces between the hyphae, the intra-thallus surfaces. This study contributes to a better understanding of how filamentous fungi adapt the growth and densification of their network to potentially adverse environmental changes.

Indexed as

PodosporaFungal ProteinsFungiHyphaeMyceliumStress, PhysiologicalFungal Proteins

Identifiers

PMID38319941
PMCPMC10846696

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.