Evidence map›Paper›PMID 38319670›Full record

ArticleInvestigative ophthalmology & visual science2024

Evaluation of Circulating Tumor DNA as a Liquid Biomarker in Uveal Melanoma.

Daniel P de Bruyn, Natasha M van Poppelen, Tom Brands, Susanne C van den Boom, Ellis Eikenboom, Anja Wagner, Monique M van Veghel-Plandsoen, Geert Geeven, Berna Beverloo, Caroline M van Rij and 7 more

Open access · goldAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 15 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Blood-Based Cell-Free DNA in Ophthalmic Oncology.Translational vision science & technology · 2025
    Review
  9. Review
  10. Review
  11. Prognostic Biomarkers in Evolving Melanoma Immunotherapy.American journal of clinical dermatology · 2025
    Review
  12. Article
  13. Review
  14. Liquid Biopsy and Ocular Tumors: A Review.Journal of current ophthalmology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Daniel P de BruynDepartment of Ophthalmology, Erasmus MC, Rotterdam, The Netherlands.
Natasha M van PoppelenDepartment of Ophthalmology, Erasmus MC, Rotterdam, The Netherlands.
Tom BrandsDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Susanne C van den BoomDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Ellis EikenboomDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Anja WagnerDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Monique M van Veghel-PlandsoenDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Geert GeevenDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Berna BeverlooDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Caroline M van RijErasmus MC Cancer Institute, Erasmus MC, Rotterdam, The Netherlands.
Robert M VerdijkDepartment of Pathology, Section Ophthalmic Pathology, Erasmus MC, Rotterdam, The Netherlands.
Nicole C NausDepartment of Ophthalmology, Erasmus MC, Rotterdam, The Netherlands.
Mette M BaggerDepartment of Ophthalmology, Rigshospitalet, Copenhagen University, Copenhagen, Denmark.
Jens F KiilgaardDepartment of Ophthalmology, Rigshospitalet, Copenhagen University, Copenhagen, Denmark.
Annelies de KleinDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Erwin BrosensDepartment of Clinical Genetics, Erasmus MC, Rotterdam, The Netherlands.
Emine KiliçDepartment of Ophthalmology, Erasmus MC, Rotterdam, The Netherlands.
Erasmus MC · NLCopenhagen University Hospital · DKLeiden University Medical Center · NLRigshospitalet · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Uveal melanoma (UM) has a high propensity to metastasize. Prognosis is associated with specific driver mutations and copy number variations (CNVs), but limited primary tumor tissue is available for molecular characterization due to eye-sparing irradiation treatment. This study aimed to assess the rise in circulating tumor DNA (ctDNA) levels in UM and evaluate its efficacy for CNV-profiling of patients with UM. Methods: In a pilot study, we assessed ctDNA levels in the blood of patients with UM (n = 18) at various time points, including the time of diagnosis (n = 13), during fractionated stereotactic radiotherapy (fSRT) treatment (n = 6), and upon detection of metastatic disease (n = 13). Shallow whole-genome sequencing (sWGS) combined with in silico size-selection was used to identify prognostically relevant CNVs in patients with UM (n = 26) from peripheral blood retrieved at the time of diagnosis (n = 9), during fSRT (n = 5), during post-treatment follow-up (n = 4), metastasis detection (n = 6), and metastasis follow-up (n = 4). Results: A total of 34 patients had blood analyzed for ctDNA detection (n = 18) and/or CNV analysis (n = 26) at various time points. At the time of diagnosis, 5 of 13 patients (38%) had detectable ctDNA (median = 0 copies/mL). Upon detection of metastatic disease, ctDNA was detected in 10 of 13 patients (77%) and showed increased ctDNA levels (median = 24 copies/mL, P < 0.01). Among the six patients analyzed during fSRT, three (50%) patients had detectable ctDNA at baseline and three of six (50%) patients had undetectable levels of ctDNA. During the fSRT regimen, ctDNA levels remained unchanged (P > 0.05). The ctDNA fractions were undetectable to low in localized disease, and sWGS did not elucidate chromosome 3 status from blood samples. However, in 7 of 10 (70%) patients with metastases, the detection of chromosome 3 loss corresponded to the high metastatic-risk class. Conclusions: The rise in ctDNA levels observed in patients with UM harboring metastases suggests its potential utility for CNV profiling. These findings highlight the potential of using ctDNA for metastasis detection and patient inclusion in therapeutic studies targeting metastatic UM.

Indexed as

Circulating Tumor DNAMelanomaUveal NeoplasmsBiomarkersDNA Copy Number VariationsHumansPilot ProjectsUveal MelanomaBiomarkersCirculating Tumor DNA

Identifiers

PMID38319670
PMCPMC10854420
OpenAlexW4391560638

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.