Evidence map›Paper›PMID 38319567›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

Detection of Hypoxia in 2D and 3D Cell Culture Systems Using Genetically Encoded Fluorescent Hypoxia Sensors.

Tabea Marie Fleischhammer, Sandra Dienemann, Nico Ulber, Iliyana Pepelanova, Antonina Lavrentieva

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Tabea Marie FleischhammerInstitute of Technical Chemistry, Leibniz University of Hanover, Hanover, Germany.
Sandra DienemannInstitute of Technical Chemistry, Leibniz University of Hanover, Hanover, Germany.
Nico UlberInstitute of Technical Chemistry, Leibniz University of Hanover, Hanover, Germany.
Iliyana PepelanovaInstitute of Technical Chemistry, Leibniz University of Hanover, Hanover, Germany.
Antonina LavrentievaInstitute of Technical Chemistry, Leibniz University of Hanover, Hanover, Germany. lavrentieva@iftc.uni-hannover.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In vivo oxygen availability varies widely between cellular microenvironments, depending on the tissue of origin and its cellular niche. It has long been known that too high or too low oxygen concentrations can act as a biological stressor. Thus, the precise control of oxygen availability should be a consideration for cell culture optimization, especially in the field of three-dimensional (3D) cell culture. In this chapter, we describe a system for visualizing oxygen limitations at a cellular level using human adipose tissue-derived mesenchymal stem cells (hAD-MSCs) that were genetically modified to express a fluorescent hypoxia sensor. This sensor can detect the activation of hypoxia-induced factors (HIF) transcription factors that lead to the expression of the oxygen-independent fluorescent protein, UnaG, at low oxygen concentrations. The response of these hypoxia reporter cells can be evaluated in two-dimensional (2D) and 3D cultivation platforms during exposure to hypoxia (1% O

Indexed as

Cell Culture Techniques, Three DimensionalHypoxiaCell Culture TechniquesColoring AgentsHumansOxygenColoring AgentsOxygen3D cell cultureAdipose tissue-derived mesenchymal stem cellsGelMAGenetically encoded hypoxia sensorsHIF-1HydrogelHypoxia reporter cellsMSCUnaG

Identifiers

PMID38319567

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.