Evidence map›Paper›PMID 38318875›Full record

ArticlePlant physiology2024

Gene expression and metabolite levels converge in the thermogenic spadix of skunk cabbage.

Haruka Tanimoto, Yui Umekawa, Hideyuki Takahashi, Kota Goto, Kikukatsu Ito

Abstract read
In one paragraph

Article in Plant physiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Genome-wide identification ofFrontiers in plant science · 2026
    Article
  3. miR398 targets a CuBMC plant biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Haruka TanimotoUnited Graduate School of Agricultural Science, Iwate University, Morioka, Iwate 020-8550, Japan.ORCID 0009-0000-9313-6318
Yui UmekawaDepartment of Planning and General Affairs, Akita Research Institute of Food and Brewing, Araya-machi, Akita 010-1623, Japan.ORCID 0009-0004-9190-3199
Hideyuki TakahashiDepartment of Agriculture, School of Agriculture, Tokai University, Kumamoto 862-8652, Japan.ORCID 0000-0002-2265-5353
Kota GotoFaculty of Agriculture, Iwate University, Morioka, Iwate 020-8550, Japan.ORCID 0009-0000-6511-9836
Kikukatsu ItoUnited Graduate School of Agricultural Science, Iwate University, Morioka, Iwate 020-8550, Japan.ORCID 0000-0003-1217-3462

Funding

Japan Society for the Promotion of Science 24380182
6 · The paper itself

Abstract

The inflorescence (spadix) of skunk cabbage (Symplocarpus renifolius) is strongly thermogenic and can regulate its temperature at around 23 °C even when the ambient temperature drops below freezing. To elucidate the mechanisms underlying developmentally controlled thermogenesis and thermoregulation in skunk cabbage, we conducted a comprehensive transcriptome and metabolome analysis across 3 developmental stages of spadix development. Our RNA-seq analysis revealed distinct groups of expressed genes, with selenium-binding protein 1/methanethiol oxidase (SBP1/MTO) exhibiting the highest levels in thermogenic florets. Notably, the expression of alternative oxidase (AOX) was consistently high from the prethermogenic stage through the thermogenic stage in the florets. Metabolome analysis showed that alterations in nucleotide levels correspond with the developmentally controlled and tissue-specific thermogenesis of skunk cabbage, evident by a substantial increase in AMP levels in thermogenic florets. Our study also reveals that hydrogen sulfide, a product of SBP1/MTO, inhibits cytochrome c oxidase (COX)-mediated mitochondrial respiration, while AOX-mediated respiration remains relatively unaffected. Specifically, at lower temperatures, the inhibitory effect of hydrogen sulfide on COX-mediated respiration increases, promoting a shift toward the dominance of AOX-mediated respiration. Finally, despite the differential regulation of genes and metabolites throughout spadix development, we observed a convergence of gene expression and metabolite accumulation patterns during thermogenesis. This synchrony may play a key role in developmentally regulated thermogenesis. Moreover, such convergence during the thermogenic stage in the spadix may provide a solid molecular basis for thermoregulation in skunk cabbage.

Indexed as

AraceaeGene Expression Regulation, PlantPlant ProteinsAlternative OxidaseInflorescenceMetabolomeMitochondrial ProteinsOxidoreductasesThermogenesisTranscriptomeAlternative OxidaseMitochondrial ProteinsOxidoreductasesPlant Proteins

Identifiers

PMID38318875
PMCPMC11142342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.