Evidence map›Paper›PMID 38318504›Full record

ArticleFrontiers in immunology2023

Divergent HLA variations and heterogeneous expression but recurrent HLA loss-of- heterozygosity and common

Wan Ching Lim, Maria Eugenia Marques Da Costa, Karine Godefroy, Eric Jacquet, Loren Gragert, Windy Rondof, Antonin Marchais, Naima Nhiri, Davide Dalfovo, Mathias Viard and 11 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Multiancestry Transcriptome-Wide Association Study Identifies Candidate Genes Associated with Hepatoblastoma.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2025
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 4 countries.

Wan Ching LimINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Maria Eugenia Marques Da CostaINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Karine GodefroyDepartment of Pathology and Laboratory Medicine, Translational Research Laboratory and Biobank, AMMICA, INSERM US23/CNRS UMS3655, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Eric JacquetInstitut de Chimie des Substances Naturelles, CNRS UPR2301, Université Paris-Saclay, Gif-sur-Yvette, France.
Loren GragertDepartment of Pathology and Laboratory Medicine, Tulane University School of Medicine, New Orleans, LA, United States.
Windy RondofINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Antonin MarchaisINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Naima NhiriInstitut de Chimie des Substances Naturelles, CNRS UPR2301, Université Paris-Saclay, Gif-sur-Yvette, France.
Davide DalfovoDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Mathias ViardFrederick National Laboratory for Cancer Research, National Cancer Institute, Frederick, MD, United States.
Nizar LabaiedDepartment of Pathology and Laboratory Medicine, Translational Research Laboratory and Biobank, AMMICA, INSERM US23/CNRS UMS3655, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Asif M KhanSchool of Data Sciences, Perdana University, Kuala Lumpur, Malaysia.
Philippe DessenBioinformatics Platform, AMMICA, INSERM US23/CNRS UMS3655, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Alessandro RomanelDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Claudia PasqualiniINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Gudrun SchleiermacherINSERM U830, Recherche Translationnelle en Oncologie Pédiatrique (RTOP), and SIREDO Oncology Center (Care, Innovation and Research for Children and AYA with Cancer), PSL Research University, Institut Curie, Paris, France.
Mary CarringtonFrederick National Laboratory for Cancer Research, National Cancer Institute, Frederick, MD, United States.
Laurence ZitvogelINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Jean-Yves ScoazecDepartment of Pathology and Laboratory Medicine, Translational Research Laboratory and Biobank, AMMICA, INSERM US23/CNRS UMS3655, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Birgit GeoergerINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Jerome SalmonINSERM U1015, Gustave Roussy Cancer Campus, Université Paris-Saclay, Villejuif, France.
Centre National de la Recherche Scientifique · FRInserm · FRUniversity of Trento · ITFrederick National Laboratory for Cancer Research · USRagon Institute of MGH, MIT and Harvard · USSanofi (France) · FRTulane University · US

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
NCI NIH HHS 75N91019D00024
6 · The paper itself

Abstract

The human leukocyte antigen (HLA) system is a major factor controlling cancer immunosurveillance and response to immunotherapy, yet its status in pediatric cancers remains fragmentary. We determined high-confidence HLA genotypes in 576 children, adolescents and young adults with recurrent/refractory solid tumors from the MOSCATO-01 and MAPPYACTS trials, using normal and tumor whole exome and RNA sequencing data and benchmarked algorithms. There was no evidence for narrowed HLA allelic diversity but discordant homozygosity and allele frequencies across tumor types and subtypes, such as in embryonal and alveolar rhabdomyosarcoma, neuroblastoma

Indexed as

GliomaSarcoma, EwingAdolescentAnimalsAntigen PresentationChildHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensHLA-B AntigensHumansYoung AdultHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA AntigensHLA-B AntigensHLAimmunogeneticsimmunotherapypediatric cancersrefractory and recurrent solid tumorstumor immunity

Identifiers

PMID38318504
PMCPMC10839790
OpenAlexW4391105045

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.