Evidence map›Paper›PMID 38316881›Full record

ArticleNature structural & molecular biology2024

A novel class of inhibitors that disrupts the stability of integrin heterodimers identified by CRISPR-tiling-instructed genetic screens.

Nicole M Mattson, Anthony K N Chan, Kazuya Miyashita, Elizaveta Mukhaleva, Wen-Han Chang, Lu Yang, Ning Ma, Yingyu Wang, Sheela Pangeni Pokharel, Mingli Li and 17 more

Open access · hybridAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. PARP1-mediated 5' flap dynamics facilitate Okazaki fragment maturation.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Nuclear Control of Mitochondrial Homeostasis and Venetoclax Efficacy in AML via COX4I1.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  12. Article
  13. Article
  14. Veterinary sciences · 2024
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 3 institutions in 2 countries.

Nicole M MattsonDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0001-5881-3387
Anthony K N ChanDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0002-7091-1294
Kazuya MiyashitaDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Elizaveta MukhalevaDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Wen-Han ChangDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Lu YangDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Ning MaDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0003-4653-7797
Yingyu WangDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Sheela Pangeni PokharelDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Mingli LiDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Qiao LiuDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Xiaobao XuDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Renee ChenDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Priyanka SinghDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Leisi ZhangDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Zeinab ElsayedDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Bryan ChenDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.
Denise KeenCity of Hope Comprehensive Cancer Center, Duarte, CA, USA.
Patrick PirrotteIntegrated Mass Spectrometry Shared Resource, City of Hope Comprehensive Cancer Center, Duarte, CA, USA.
Steven T RosenCity of Hope Comprehensive Cancer Center, Duarte, CA, USA.
Jianjun ChenDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0003-3749-2902
Mark A LaBargeCity of Hope Comprehensive Cancer Center, Duarte, CA, USA.
John E ShivelyCity of Hope Comprehensive Cancer Center, Duarte, CA, USA.
Nagarajan VaidehiDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0001-8100-8132
Russell C RockneDepartment of Computational and Quantitative Medicine, Beckman Research Institute, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0002-1557-159X
Mingye FengCity of Hope Comprehensive Cancer Center, Duarte, CA, USA.
Chun-Wei ChenDepartment of Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA, USA. cweichen@coh.org.ORCID http://orcid.org/0000-0002-8737-6830
City of Hope · USCity Of Hope National Medical Center · USTranslational Genomics Research Institute · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Project 4U54CA243124 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI MULLIGHAN, CHARLES G. · 2019 to 2023
$10.5M
Structural dynamics underlying GPCR-G protein selectivityR01GM117923 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI VAIDEHI, NAGARAJAN · 2017 to 2024
$3.8M
Targeting p38 gamma signaling to advance Cutaneous T Cell Lymphoma TherapyR01CA233922 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI ROSEN, STEVEN TERRY · 2019 to 2023
$3.4M
The role and therapeutic potential of IGF2BP2 in MLL-rearranged leukemiaR01CA271497 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Jianjun Chen · 2022 to 2026
$2.8M
Targeting FTO to treat acute myeloid leukemiaR01CA243386 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, JIANJUN · 2020 to 2024
$2.8M
Combinational Targeting the Feed-forward Epigenetic Circuitry in Mixed Lineage LeukemiaR37CA233691 · NCI · MAYO CLINIC ROCHESTER · PI CHEN, CHUN-WEI DAVID · 2019 to 2025
$2.8M
TET2-mediated epitranscriptomic regulation in leukemia microenvironmentR01CA280389 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Jianjun Chen · 2023 to 2026
$2.7M
Targeting tumor-associated macrophages for triple-negative breast cancer treatmentR01CA258778 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI Mingye Feng · 2022 to 2026
$2.6M
The role and mechanism of METTL3/METTL14-mediated RNA modification in the pathogenesis and drug-resistance of AMLR01CA236399 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, JIANJUN · 2019 to 2023
$2.3M
Role of BAZ2A in MLL-r leukemia and therapeutic responseR01CA236626 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI CHEN, CHUN-WEI DAVID · 2019 to 2023
$2.2M
Identifying and engaging a universal adjuvant for breaking macrophage immune tolerance in cancerR01CA255250 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI FENG, MINGYE · 2021 to 2025
$2.1M
NCI NIH HHS F99 CA274649NCI NIH HHS K00 CA274649NCI NIH HHS P30 CA033572NCI NIH HHS R00 CA197498NCI NIH HHS R01 CA233922NCI NIH HHS R01 CA236399NCI NIH HHS R01 CA236626NCI NIH HHS R01 CA243386NCI NIH HHS R01 CA255250NCI NIH HHS R01 CA258778NCI NIH HHS R01 CA271497NCI NIH HHS R01 CA278050NCI NIH HHS R01 CA280389NCI NIH HHS R37 CA233691NCI NIH HHS U54 CA243124NIGMS NIH HHS R01 GM117923
6 · The paper itself

Abstract

The plasma membrane is enriched for receptors and signaling proteins that are accessible from the extracellular space for pharmacological intervention. Here we conducted a series of CRISPR screens using human cell surface proteome and integrin family libraries in multiple cancer models. Our results identified ITGAV (integrin αV) and its heterodimer partner ITGB5 (integrin β5) as the essential integrin α/β pair for cancer cell expansion. High-density CRISPR gene tiling further pinpointed the integral pocket within the β-propeller domain of ITGAV for integrin αVβ5 dimerization. Combined with in silico compound docking, we developed a CRISPR-Tiling-Instructed Computer-Aided (CRISPR-TICA) pipeline for drug discovery and identified Cpd_AV2 as a lead inhibitor targeting the β-propeller central pocket of ITGAV. Cpd_AV2 treatment led to rapid uncoupling of integrin αVβ5 and cellular apoptosis, providing a unique class of therapeutic action that eliminates the integrin signaling via heterodimer dissociation. We also foresee the CRISPR-TICA approach to be an accessible method for future drug discovery studies.

Indexed as

Clustered Regularly Interspaced Short Palindromic RepeatsCell MembraneHumans

Identifiers

PMID38316881
PMCPMC10948361
OpenAlexW4391539932

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.