Evidence map›Paper›PMID 38315849›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

A massive alteration of gene expression in undescended testicles of dogs and the association of

Monika Stachowiak, Joanna Nowacka-Woszuk, Alicja Szabelska-Beresewicz, Joanna Zyprych-Walczak, Paulina Krzeminska, Oskar Sosinski, Tomasz Nowak, Marek Switonski

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Monika Stachowiak *Department of Genetics and Animal Breeding, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0003-3485-1359
Joanna Nowacka-Woszuk *Department of Genetics and Animal Breeding, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0002-1041-3576
Alicja Szabelska-BeresewiczDepartment of Mathematical and Statistical Methods, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0002-1806-0891
Joanna Zyprych-WalczakDepartment of Mathematical and Statistical Methods, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0001-9465-3851
Paulina KrzeminskaDepartment of Genetics and Animal Breeding, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0002-4532-6974
Oskar SosinskiDepartment of Genetics and Animal Breeding, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0009-0007-3156-6428
Tomasz NowakDepartment of Genetics and Animal Breeding, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0002-1820-5202
Marek SwitonskiDepartment of Genetics and Animal Breeding, Poznan University of Life Sciences, 60-637 Poznan, Poland.ORCID 0000-0003-2539-9508
University of Life Sciences in Poznań · PLInstitute of Bioorganic Chemistry, Polish Academy of Sciences · PL

Funding

National Science Centre in Poland 2018/29/B/NZ9/01065
6 · The paper itself

Abstract

Cryptorchidism is the most common form of disorder of sex development in male dogs, but its hereditary predisposition is poorly elucidated. The gonadal transcriptome of nine unilaterally cryptorchid dogs and seven control dogs was analyzed using RNA-seq. Comparison between the scrotal and inguinal gonads of unilateral cryptorchid dogs revealed 8,028 differentially expressed genes (DEGs) (3,377 up-regulated and 4,651 down-regulated). A similar number of DEGs (7,619) was found by comparing the undescended testicles with the descended testicles of the control dogs. The methylation status of the selected DEGs was also analyzed, with three out of nine studied DEGs showing altered patterns. Bioinformatic analysis of the cDNA sequences revealed 20,366 SNP variants, six of which showed significant differences in allelic counts between cryptorchid and control dogs. Validation studies in larger cohorts of cryptorchid (

Indexed as

CryptorchidismHistone Acetyltransferases3' Untranslated RegionsAnimalsDogsGene ExpressionMaleProtein Processing, Post-TranslationalTestis3' Untranslated RegionsHistone AcetyltransferasescryptorchidismDNA methylationhistone H3 acetylationRNA-seqtranscriptome

Identifiers

PMID38315849
PMCPMC10873591
OpenAlexW4391529188

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.