Evidence map›Paper›PMID 38314910›Full record

ArticleJournal of visualized experiments : JoVE2024

Measuring Dynamic Glycosomal pH Changes in Living Trypanosoma brucei.

Daniel Call, Sabrina S Pizarro, Erica Tovey, Emily Knight, Carrie Baumgardner, Kenneth A Christensen, James C Morris

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Daniel Call *Department Chemistry and Biochemistry, Brigham Young University.
Sabrina S Pizarro *Eukaryotic Pathogens Innovation Center, Clemson University; Department of Genetics and Biochemistry, Clemson University.
Erica ToveyDepartment Chemistry and Biochemistry, Brigham Young University.
Emily KnightEukaryotic Pathogens Innovation Center, Clemson University; Department of Genetics and Biochemistry, Clemson University.
Carrie BaumgardnerEukaryotic Pathogens Innovation Center, Clemson University; Department of Physics and Astronomy, Clemson University.
Kenneth A ChristensenDepartment Chemistry and Biochemistry, Brigham Young University.
James C MorrisEukaryotic Pathogens Innovation Center, Clemson University; jmorri2@clemson.edu.
Clemson University · USBrigham Young University · US

Funding

Regulation of Cryptosporidium DevelopmentP20GM146584 · NIGMS · CLEMSON UNIVERSITY · PI JAMES Culvin MORRIS · 2022 to 2026
$13.5M
Development of a multiplexed assay in kinetoplastid parasites to identify probes for glycolysisR01AI156382 · NIAID · CLEMSON UNIVERSITY · PI CHRISTENSEN, KENNETH A, GOLDEN, JENNIFER E. · 2021 to 2024
$1.9M
NIAID NIH HHS R01 AI156382NIGMS NIH HHS P20 GM146584
6 · The paper itself

Abstract

Glucose metabolism is critical for the African trypanosome, Trypanosoma brucei, as an essential metabolic process and regulator of parasite development. Little is known about the cellular responses generated when environmental glucose levels change. In both bloodstream and procyclic form (insect stage) parasites, glycosomes house most of glycolysis. These organelles are rapidly acidified in response to glucose deprivation, which likely results in the allosteric regulation of glycolytic enzymes such as hexokinase. In previous work, localizing the chemical probe used to make pH measurements was challenging, limiting its utility in other applications. This paper describes the development and use of parasites that express glycosomally localized pHluorin2, a heritable protein pH biosensor. pHluorin2 is a ratiometric pHluorin variant that displays a pH (acid)-dependent decrease in excitation at 395 nm while simultaneously yielding an increase in excitation at 475 nm. Transgenic parasites were generated by cloning the pHluorin2 open reading frame into the trypanosome expression vector pLEW100v5, enabling inducible protein expression in either lifecycle stage. Immunofluorescence was used to confirm the glycosomal localization of the pHluorin2 biosensor, comparing the localization of the biosensor to the glycosomal resident protein aldolase. The sensor responsiveness was calibrated at differing pH levels by incubating cells in a series of buffers that ranged in pH from 4 to 8, an approach we have previously used to calibrate a fluorescein-based pH sensor. We then measured pHluorin2 fluorescence at 405 nm and 488 nm using flow cytometry to determine glycosomal pH. We validated the performance of the live transgenic pHluorin2-expressing parasites, monitoring pH over time in response to glucose deprivation, a known trigger of glycosomal acidification in PF parasites. This tool has a range of potential applications, including potentially being used in high-throughput drug screening. Beyond glycosomal pH, the sensor could be adapted to other organelles or used in other trypanosomatids to understand pH dynamics in the live cell setting.

Indexed as

Trypanosoma brucei bruceiAnimalsAnimals, Genetically ModifiedGlucoseHydrogen-Ion ConcentrationMicrobodiesProtozoan ProteinsGlucoseProtozoan Proteins

Identifiers

PMID38314910
PMCPMC10879817
OpenAlexW4391042862

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.