Evidence map›Paper›PMID 38314824›Full record

ArticleJournal of visualized experiments : JoVE2024

Live Calcium Imaging of Virus-Infected Human Intestinal Organoid Monolayers Using Genetically Encoded Calcium Indicators.

J Thomas Gebert, Francesca J Scribano, Kristen A Engevik, Joseph M Hyser

Open access · greenAbstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

J Thomas GebertAlkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine.
Francesca J ScribanoAlkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine.
Kristen A EngevikAlkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine.
Joseph M HyserAlkek Center for Metagenomics and Microbiome Research, Department of Molecular Virology and Microbiology, Baylor College of Medicine; joseph.hyser@bcm.edu.
Baylor College of Medicine · US

Funding

X-ray Crystallographic Studies on CalicivirusesP01AI057788 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PRASAD, BIDADI VENKATARAM · 2004 to 2024
$34.4M
Training Supplement in Enteric Virus Exploitation of Calcium SignalingR01DK115507 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Joseph M. Hyser · 2018 to 2026
$5.0M
Dissecting Rotavirus Viroporin and Enterotoxin Calcium Signaling PathwaysR01AI158683 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI CRAWFORD, SUE ELLEN, ESTES, MARY KOLB · 2021 to 2025
$2.0M
The volume-regulated anion channel as a regulator of secretory activity in the intestinal epitheliumF30DK131828 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI GEBERT, JOHN THOMAS · 2022 to 2024
$146k
Calcium signaling in Calicivirus infection and replicationF31DK132942 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI SCRIBANO, FRANCESCA JEAN · 2022 to 2024
$143k
Epithelial responses to rotavirus induced purinergic signalingF32DK130288 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI ENGEVIK, KRISTEN · 2021 to 2023
$118k
Role of Rotavirus NSP4 Viroporin and Enterotoxin Activity in Aberrant Calcium Signaling and ReplicationF31AI169983 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI PERRY, JACOB · 2022 to 2023
$93k
NIAID NIH HHS F31 AI169983NIAID NIH HHS P01 AI057788NIAID NIH HHS R01 AI158683NIDDK NIH HHS F30 DK131828NIDDK NIH HHS F31 DK132942NIDDK NIH HHS F32 DK130288NIDDK NIH HHS R01 DK115507
6 · The paper itself

Abstract

Calcium signaling is an integral regulator of nearly every tissue. Within the intestinal epithelium, calcium is involved in the regulation of secretory activity, actin dynamics, inflammatory responses, stem cell proliferation, and many other uncharacterized cellular functions. As such, mapping calcium signaling dynamics within the intestinal epithelium can provide insight into homeostatic cellular processes and unveil unique responses to various stimuli. Human intestinal organoids (HIOs) are a high-throughput, human-derived model to study the intestinal epithelium and thus represent a useful system to investigate calcium dynamics. This paper describes a protocol to stably transduce HIOs with genetically encoded calcium indicators (GECIs), perform live fluorescence microscopy, and analyze imaging data to meaningfully characterize calcium signals. As a representative example, 3-dimensional HIOs were transduced with lentivirus to stably express GCaMP6s, a green fluorescent protein-based cytosolic GECI. The engineered HIOs were then dispersed into a single-cell suspension and seeded as monolayers. After differentiation, the HIO monolayers were infected with rotavirus and/or treated with drugs known to stimulate a calcium response. An epifluorescence microscope fitted with a temperature-controlled, humidified live-imaging chamber allowed for long-term imaging of infected or drug-treated monolayers. Following imaging, acquired images were analyzed using the freely available analysis software, ImageJ. Overall, this work establishes an adaptable pipeline for characterizing cellular signaling in HIOs.

Indexed as

CalciumIntestinesHumansIntestinal MucosaMicroscopy, FluorescenceOrganoidsCalcium

Identifiers

PMID38314824
PMCPMC11157669
OpenAlexW4391042811

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.