Evidence map›Paper›PMID 38314064›Full record

ArticleInfluenza and other respiratory viruses2024

Detection of clade 2.3.4.4 highly pathogenic avian influenza H5 viruses in healthy wild birds in the Hadeji-Nguru wetland, Nigeria 2022.

Kayode Olawuyi, Olukayode Orole, Clement Meseko, Isabella Monne, Ismaila Shittu, Zecchin Bianca, Alice Fusaro, Bitrus Inuwa, Ruth Akintola, Josiah Ibrahim and 1 more

Open access · goldAbstract read
In one paragraph

Article in Influenza and other respiratory viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Kayode OlawuyiNational Veterinary Research Institute, Vom, Nigeria.ORCID 0000-0003-1603-1285
Olukayode OroleDepartment of Microbiology, Federal University of Lafia, Lafia, Nigeria.
Clement MesekoNational Veterinary Research Institute, Vom, Nigeria.
Isabella MonneIstituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy.
Ismaila ShittuNational Veterinary Research Institute, Vom, Nigeria.
Zecchin BiancaIstituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy.
Alice FusaroIstituto Zooprofilattico Sperimentale delle Venezie, Padova, Italy.
Bitrus InuwaNational Veterinary Research Institute, Vom, Nigeria.
Ruth AkintolaNational Veterinary Research Institute, Vom, Nigeria.
Josiah IbrahimAP Leventis Ornithological Research Institute, Jos, Nigeria.
Maryam MuhammadNational Veterinary Research Institute, Vom, Nigeria.
National Veterinary Research Institute · NGIstituto Zooprofilattico Sperimentale delle Venezie · ITFederal University Lafia · NGUniversity of Jos · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The introduction of multiple avian influenza virus (AIV) subtypes into Nigeria has resulted in several poultry outbreaks purportedly linked to trade and wild birds. The role of wild birds in perpetuating AIV in Nigeria was, therefore, elucidated. Methods: A cross-sectional study was conducted among wild aquatic bird species at the Hadejia-Nguru wetlands in Northeastern Nigeria between March and April 2022. A total of 452 swabs (226 cloacae and 226 oropharyngeal) were collected using a mist net to capture the birds. These samples were tested by RT-qPCR, followed by sequencing. Results: Highly pathogenic AIV of the H5N1 subtype was identified in clinically healthy wild bird species, namely, African jacana, ruff, spur-winged goose, squared-tailed nightjar, white-faced whistling ducks, and white stork. A prevalence of 11.1% (25/226) was recorded. Phylogenetic analysis of the complete HA gene segment indicated the presence of clade 2.3.4.4b. However, these H5N1 viruses characterized from these wild birds cluster separately from the H5N1 viruses characterized in Nigerian poultry since early 2021. Specifically, the viruses form two distinct genetic groups both linked with the Eurasian H5N1 gene pool but likely resulting from two distinct introductions of the virus in the region. Whole-genome characterization of the viruses reveals the presence of mammalian adaptive marker E627K in two Afro-tropical resident aquatic ducks. This has zoonotic potential. Conclusion: Our findings highlight the key role of surveillance in wild birds to monitor the diversity of viruses in this area, provide the foundations of epidemiological understanding, and facilitate risk assessment.

Indexed as

Influenza A virusInfluenza A Virus, H5N1 SubtypeInfluenza in BirdsAnimalsAnimals, WildBirdsCross-Sectional StudiesDucksHumansMammalsNigeriaPhylogenyPoultryWetlandsAIVH5N1Hadejia‐NguruHPAImigratory wild birds

Identifiers

PMID38314064
PMCPMC10837781
OpenAlexW4391510467

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.