Evidence map›Paper›PMID 38313292›Full record

ArticleResearch square2024

Arid1a-dependent canonical BAF complex suppresses inflammatory programs to drive efficient Germinal Center B cell responses.

Ajay Abraham, Daniela Samaniego-Castruita, Jillian Paladino, Isabella Han, Prathyaya Ramesh, Mi Thao Tran, Rebecca M Southern, Ashima Shukla, Vipul Shukla

Open access · greenAbstract readPreprint
In one paragraph

Article in Research square, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 3 countries.

Ajay AbrahamDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Daniela Samaniego-CastruitaDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Jillian PaladinoDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Isabella HanDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Prathyaya RameshDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Mi Thao TranDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Rebecca M SouthernDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Ashima ShuklaDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Vipul ShuklaDepartment of Cell and Developmental Biology, Northwestern University, Chicago, Illinois, USA, 60611.
Northwestern University · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Devalingam Mahalingam · 1993 to 2026
$153.9M
5-laser 30-parameter FACSymphony-S6 SORP Cell Sorter from BD BiosciencesS10OD026814 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PERLMAN, HARRIS R · 2019 to 2019
$904k
Tumor suppressive functions of TET proteins in B cell malignancies: role of G-quadruplex structuresR00CA248835 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SHUKLA, VIPUL · 2022 to 2024
$726k
FACSAria SORP Cell SorterS10OD011996 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GOOLSBY, CHARLES L. · 2012 to 2012
$482k
Tumor suppressive functions of TET proteins in B cell malignancies: role of G-quadruplex structuresK99CA248835 · NCI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SHUKLA, VIPUL · 2020 to 2021
$289k
NCI NIH HHS K99 CA248835NCI NIH HHS P30 CA060553NCI NIH HHS R00 CA248835NIH HHS S10 OD011996NIH HHS S10 OD026814
6 · The paper itself

Abstract

Differentiating B cells in germinal centers (GC) require tightly coordinated transcriptional and epigenetic transitions to generate efficient humoral immune responses. The mammalian Brg1/Brm-associated factor (BAF) complexes are major regulators of nucleosomal remodeling, crucial for cellular differentiation and development, and are commonly mutated in several cancers, including GC-derived B cell lymphomas. However, the specific roles of distinct BAF complexes in GC B cell biology and generation of functional humoral immune responses are not well understood. Here, we show that the A-T Rich Interaction Domain 1a (Arid1a) containing canonical BAF (cBAF) complex is required for maintenance of GCs and therefore high affinity antibody responses. While Arid1a-deficient B cells undergo activation to initiate GC responses, they fail to sustain the GC program resulting in premature GC collapse. We discovered that Arid1a-dependent cBAF activity establishes permissive chromatin landscapes during B cell activation and is concomitantly required to suppress inflammatory gene programs to maintain transcriptional fidelity in early GC B cells. Interestingly, the inflammatory signatures instigated by Arid1a deficiency in early GC B cells recruited neutrophils and inflammatory monocytes and eventually disrupted GC homeostasis. Dampening of inflammatory cues with anti-inflammatory glucocorticoid receptor signaling rescued GC B cell differentiation of Arid1a-deficient B cells, thus highlighting a critical role of inflammation in impeding GC responses. In sum, our work identifies essential functions of Arid1a-dependent BAF activity in promoting efficient GC responses. These findings further support an emerging paradigm in which unrestrained inflammation limits GC-derived humoral responses, as reported in the context of severe bacterial and viral infections.

Indexed as

BAF complexB cellsEpigeneticsGerminal CenterInflammation

Identifiers

PMID38313292
PMCPMC10836118
OpenAlexW4390986137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.