Evidence map›Paper›PMID 38312938›Full record

ArticleNAR genomics and bioinformatics2024

spatialHeatmap: visualizing spatial bulk and single-cell assays in anatomical images.

Jianhai Zhang, Le Zhang, Brendan Gongol, Jordan Hayes, Alexander T Borowsky, Julia Bailey-Serres, Thomas Girke

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in NAR genomics and bioinformatics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jianhai ZhangInstitute for Integrative Genome Biology, Department of Botany and Plant Sciences, 1207F Genomics Building, University of California, Riverside, CA 92521, USA.
Le ZhangInstitute for Integrative Genome Biology, Department of Botany and Plant Sciences, 1207F Genomics Building, University of California, Riverside, CA 92521, USA.
Brendan GongolInstitute for Integrative Genome Biology, Department of Botany and Plant Sciences, 1207F Genomics Building, University of California, Riverside, CA 92521, USA.
Jordan HayesInstitute for Integrative Genome Biology, Department of Botany and Plant Sciences, 1207F Genomics Building, University of California, Riverside, CA 92521, USA.
Alexander T BorowskyCenter for Plant Cell Biology, Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA.
Julia Bailey-SerresCenter for Plant Cell Biology, Department of Botany and Plant Sciences, University of California, Riverside, Riverside, CA 92521, USA.ORCID https://orcid.org/0000-0002-8568-7125
Thomas GirkeInstitute for Integrative Genome Biology, Department of Botany and Plant Sciences, 1207F Genomics Building, University of California, Riverside, CA 92521, USA.ORCID https://orcid.org/0000-0003-0710-3777

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI RICHARD A MILLER · 2004 to 2026
$102.6M
Integrative Resource to Develop Translational Strategies to Promote LongevityU24AG051129 · NIA · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI CUMMINGS, STEVEN RON, EVANS, DANIEL SPENCER · 2015 to 2019
$5.3M
Acquisition of a Scalable Storage Cluster for Data Intensive NIH ResearchS10OD016290 · OD · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI GIRKE, THOMAS · 2014 to 2014
$593k
NIA NIH HHS U19 AG023122NIA NIH HHS U24 AG051129NIH HHS S10 OD016290
6 · The paper itself

Abstract

Visualizing spatial assay data in anatomical images is vital for understanding biological processes in cell, tissue, and organ organizations. Technologies requiring this functionality include traditional one-at-a-time assays, and bulk and single-cell omics experiments, including RNA-seq and proteomics. The

Identifiers

PMID38312938
PMCPMC10836942

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.