Evidence map›Paper›PMID 38312500›Full record

ArticleFrontiers in microbiology2023

Molecular characterization of the PhiKo endolysin from

Monika Szadkowska, Aleksandra Maria Kocot, Daria Sowik, Dariusz Wyrzykowski, Elzbieta Jankowska, Lukasz Pawel Kozlowski, Joanna Makowska, Magdalena Plotka

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Monika SzadkowskaLaboratory of Extremophiles Biology, Department of Microbiology, University of Gdańsk, Gdańsk, Poland.
Aleksandra Maria KocotLaboratory of Extremophiles Biology, Department of Microbiology, University of Gdańsk, Gdańsk, Poland.
Daria SowikDepartment of Biomedical Chemistry, Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland.
Dariusz WyrzykowskiDepartment of General and Inorganic Chemistry, Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland.
Elzbieta JankowskaDepartment of Biomedical Chemistry, Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland.
Lukasz Pawel KozlowskiInstitute of Informatics, Faculty of Mathematics, Informatics and Mechanics, University of Warsaw, Warsaw, Poland.
Joanna MakowskaDepartment of General and Inorganic Chemistry, Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland.
Magdalena PlotkaLaboratory of Extremophiles Biology, Department of Microbiology, University of Gdańsk, Gdańsk, Poland.
University of Gdańsk · PLUniversity of Warsaw · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: In the era of increasing bacterial resistance to antibiotics, new bactericidal substances are sought, and lysins derived from extremophilic organisms have the undoubted advantage of being stable under harsh environmental conditions. The PhiKo endolysin is derived from the phiKo bacteriophage infecting Gram-negative extremophilic bacterium Methods: Enzyme activity was assessed using turbidity reduction assays (TRAs) and antibacterial tests. Differential scanning calorimetry was applied to evaluate protein stability. The Collection of Anti-Microbial Peptides (CAMP) and Antimicrobial Peptide Calculator and Predictor (APD3) were used to predict regions with antimicrobial potential in the PhiKo primary sequence. The minimum inhibitory concentration (MIC) of the RAP-29 synthetic peptide was determined against Gram-positive and Gram-negative selected strains, and mechanism of action was investigated with use of membrane potential sensitive fluorescent dye 3,3'-Dipropylthiacarbocyanine iodide (DiSC Results and discussion: The PhiKo endolysin is highly thermostable with melting temperature of 91.70°C. However, despite its lytic effect against such extremophiles as:

Indexed as

antimicrobial peptidebacteriophageextremophilelysinthermostable endolysin

Identifiers

PMID38312500
PMCPMC10836841
OpenAlexW4391015315

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.