Evidence map›Paper›PMID 38310295›Full record

ArticlePlant methods2024

Completing the picture of field-grown cereal crops: a new method for detailed leaf surface models in wheat.

Marie Theiß, Angelina Steier, Uwe Rascher, Mark Müller-Linow

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Article in Plant methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
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2citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Marie TheißInstitute of Bio and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Str, 52425, Jülich, Germany.
Angelina SteierInstitute of Bio and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Str, 52425, Jülich, Germany.
Uwe RascherInstitute of Bio and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Str, 52425, Jülich, Germany.
Mark Müller-LinowInstitute of Bio and Geosciences, IBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Str, 52425, Jülich, Germany. m.mueller-linow@fz-juelich.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe leaf angle distribution (LAD) is an important structural parameter of agricultural crops that influences light interception, radiation fluxes and consequently plant performance. Therefore, LAD and its parametrized form, the Beta distribution, is used in many photosynthesis models. However, in field cultivations, these parameters are difficult to assess and cereal crops in particular pose challenges since their leaves are thin, flexible, and often bent and twisted around their own axis. To our knowledge, there is only a very limited set of methods currently available to calculate LADs of field-grown cereal crops that explicitly takes these special morphological properties into account.

resultsIn this study, a new processing pipeline is introduced that allows for the generation of realistic leaf surface models and the analysis of LADs of field-grown cereal crops from 3D point clouds. The data acquisition is based on a convenient stereo imaging setup. The approach was validated with different artificial targets and results on the accuracy of the 3D reconstruction, leaf surface modeling and calculated LAD are given. The mean error of the 3D reconstruction was below 1 mm for an inclination angle range between 0° and 75° and the leaf surface could be quantified with an average accuracy of 90%. The concordance correlation coefficient (CCC) of 99.6% (p-value = [Formula: see text]) indicated a high correlation between the reconstructed inclination angle and the identity line. The LADs for bent leaves were reconstructed with a mean error of 0.21° and a standard deviation of 1.55°. As an additional parameter, the insertion angle was reconstructed for the artificial leaf model with an average error < 5°. Finally, the method was tested with images of field-grown cereal crops and Beta functions were approximated from the calculated LADs. The mean CCC between reconstructed LAD and calculated Beta function was 0.66. According to Cohen, this indicates a high correlation.

conclusionThis study shows that our image processing pipeline can reconstruct the complex leaf shape of cereal crops from stereo images. The high accuracy of the approach was demonstrated with several validation experiments including artificial leaf targets. The derived leaf models were used to calculate LADs for artificial leaves and naturally grown cereal crops. This helps to better understand the influence of the canopy structure on light absorption and plant performance and allows for a more precise parametrization of photosynthesis models via the derived Beta distributions.

Indexed as

3D plant reconstructionBeta distributionCereal cropsLeaf angleLeaf angle distributionPlant phenotypingStereo imagingStructural leaf model

Identifiers

PMID38310295
PMCPMC10837940

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.