Evidence map›Paper›PMID 38310140›Full record

ArticleCommunications biology2024

Exploring TRF2-Dependent DNA Distortion Through Single-DNA Manipulation Studies.

Xiaodan Zhao, Vinod Kumar Vogirala, Meihan Liu, Yu Zhou, Daniela Rhodes, Sara Sandin, Jie Yan

Abstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaodan ZhaoDepartment of Physics, National University of Singapore, 117551, Singapore, Singapore.
Vinod Kumar VogiralaSchool of Biological Sciences, Nanyang Technology University, 637551, Singapore, Singapore.
Meihan LiuMechanobiology Institute, National University of Singapore, 117411, Singapore, Singapore.
Yu ZhouMechanobiology Institute, National University of Singapore, 117411, Singapore, Singapore.
Daniela RhodesSchool of Biological Sciences, Nanyang Technology University, 637551, Singapore, Singapore.ORCID 0000-0002-2363-2591
Sara SandinSchool of Biological Sciences, Nanyang Technology University, 637551, Singapore, Singapore. sara.sandin@umu.se.ORCID 0000-0001-6071-2761
Jie YanDepartment of Physics, National University of Singapore, 117551, Singapore, Singapore. phyyj@nus.edu.sg.ORCID 0000-0002-8555-7291

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TRF2 is a component of shelterin, a telomere-specific protein complex that protects the ends of mammalian chromosomes from DNA damage signaling and improper repair. TRF2 functions as a homodimer and its interaction with telomeric DNA has been studied, but its full-length DNA-binding properties are unknown. This study examines TRF2's interaction with single-DNA strands and focuses on the conformation of the TRF2-DNA complex and TRF2's preference for DNA chirality. The results show that TRF2-DNA can switch between extended and compact conformations, indicating multiple DNA-binding modes, and TRF2's binding does not have a strong preference for DNA supercoiling chirality when DNA is under low tension. Instead, TRF2 induces DNA bending under tension. Furthermore, both the N-terminal domain of TRF2 and the Myb domain enhance its affinity for the telomere sequence, highlighting the crucial role of multivalent DNA binding in enhancing its affinity and specificity for telomere sequence. These discoveries offer unique insights into TRF2's interaction with telomeric DNA.

Indexed as

Shelterin ComplexTelomeric Repeat Binding Protein 2AnimalsDNAMammalsTelomereTelomere-Binding ProteinsDNAShelterin ComplexTelomere-Binding ProteinsTelomeric Repeat Binding Protein 2

Identifiers

PMID38310140
PMCPMC10838314

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.