ArticleScientific data2024
Chromosome-level genome assembly of Acrossocheilus fasciatus using PacBio sequencing and Hi-C technology.
Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 9 citations in OpenAlex.
- Dietary fish oil-corn oil balance modulates growth and metabolic homeostasis of Acrossocheilus fasciatus (Steindachner, 1892) under chronic heat stress.Fish physiology and biochemistry · 2026Article
- Pan-SSR architecture in Acrossocheilus fasciatus links cross-assembly repeat conservation, repeat-unit count variation, and genomic context.Molecular genetics and genomics : MGG · 2026Article
- Modulatory effects of plant extract combinations on growth performance, hepato-intestinal homeostasis, intestinal microbiota, and Streptococcus agalactiae resistance in Acrossocheilus fasciatus.BMC veterinary research · 2026Article
- Near telomere-to-telomere diploid genome assembly of Acrossocheilus wenchowensis.Scientific data · 2026Article
- Chromosome-level genome assembly of the longfin barb (Acrossocheilus longipinnis).Scientific data · 2026Article
- Genomic Characterization and Phylogenetic Relationships ofAnimals : an open access journal from MDPI · 2026Article
- Article
- Assembling chromosome-level genomes of male and female Chanodichthys mongolicus using PacBio HiFi reads and Hi-C technologies.Scientific data · 2025Article
- Cellular mechanical memory: a potential tool for mesenchymal stem cell-based therapy.Stem cell research & therapy · 2025Review
- Chromosome-Level Genome Assembly ofInternational journal of molecular sciences · 2024Article
- Chromosome-level genome assembly of Acrossocheilus fasciatus using PacBio sequencing and Hi-C technology.Scientific data · 2024Article
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Acrossocheilus fasciatus (Cypriniformes, Cyprinidae) is emerged as a newly commercial stream fish in the south of China with high economic and ornamental value. In this study, a chromosome-level reference genome of A. fasciatus was assembled using PacBio, Illumina and Hi-C sequencing technologies. As a result, a high-quality genome was generated with a size of 879.52 Mb (accession number: JAVLVS000000000), scaffold N50 of 32.7 Mb, and contig N50 of 32.7 Mb. The largest and smallest scafford was 60.57 Mb and 16 kb, respectively. BUSCO analysis showed a completeness score of 98.3%. Meanwhile, the assembled sequences were anchored to 25 pseudo-chromosomes with an integration efficiency of 96.95%. Additionally, we found approximately 390.91 Mb of repetitive sequences that accounting for 44.45% of the assembled genome, and predicted 24,900 protein-coding genes. The available genome reported in the present study provided a crucial resource to further investigate the regulation mechanism of genetic diversity, sexual dimorphism and evolutionary histories.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.