Evidence map›Paper›PMID 38308276›Full record

ArticleJournal of translational medicine2024

DNMT3L inhibits hepatocellular carcinoma progression through DNA methylation of CDO1: insights from big data to basic research.

Xiaokai Yan, Yao Qi, Xinyue Yao, Nanjing Zhou, Xinxin Ye, Xing Chen

Open access · goldAbstract read
In one paragraph

Article in Journal of translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Xiaokai Yan *Department of Oncology, The Second Affiliated Hospital of Zunyi Medical University, Zunyi, China. yxk11011@163.com.ORCID 0000-0002-8507-3473
Yao Qi *Shanghai Molecular Medicine Engineering Technology Research Center, Shanghai, 201203, China.
Xinyue YaoDepartment of Oncology, The Second Affiliated Hospital of Zunyi Medical University, Zunyi, China.
Nanjing ZhouDepartment of Oncology, The Second Affiliated Hospital of Zunyi Medical University, Zunyi, China.
Xinxin YeDepartment of Oncology, The Second Affiliated Hospital of Zunyi Medical University, Zunyi, China.
Xing ChenDepartment of Hepatopancreatobiliary Surgery, Zhejiang Cancer Hospital, Hangzhou Institute of Medicine (HIM), Chinese Academy of Sciences, Hangzhou, 310022, Zhejiang, China. chenxing@zjcc.org.cn.
Zunyi Medical University · CNNational Engineering Research Center for Nanotechnology · CNZhejiang Cancer Hospital · CN

Funding

Natural Science Foundation of Guizhou Province QKHCG [2019] 4433Natural Science Foundation of Guizhou Province QKHJC-ZK [2021] YB468Natural Science Foundation of Zhejiang Province LQ23H160010
6 · The paper itself

Abstract

backgroundDNMT3L is a crucial DNA methylation regulatory factor, yet its function and mechanism in hepatocellular carcinoma (HCC) remain poorly understood. Bioinformatics-based big data analysis has increasingly gained significance in cancer research. Therefore, this study aims to elucidate the role of DNMT3L in HCC by integrating big data analysis with experimental validation.

methodsDozens of HCC datasets were collected to analyze the expression of DNMT3L and its relationship with prognostic indicators, and were used for molecular regulatory relationship evaluation. The effects of DNMT3L on the malignant phenotypes of hepatoma cells were confirmed in vitro and in vivo. The regulatory mechanisms of DNMT3L were explored through MSP, western blot, and dual-luciferase assays.

resultsDNMT3L was found to be downregulated in HCC tissues and associated with better prognosis. Overexpression of DNMT3L inhibits cell proliferation and metastasis. Additionally, CDO1 was identified as a target gene of DNMT3L and also exhibits anti-cancer effects. DNMT3L upregulates CDO1 expression by competitively inhibiting DNMT3A-mediated methylation of CDO1 promoter.

conclusionsOur study revealed the role and epi-transcriptomic regulatory mechanism of DNMT3L in HCC, and underscored the essential role and applicability of big data analysis in elucidating complex biological processes.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsBig DataCell Line, TumorCysteine DioxygenaseDNA (Cytosine-5-)-MethyltransferasesDNA MethylationHumansPromoter Regions, GeneticCDO1 protein, humanCysteine DioxygenaseDNA (Cytosine-5-)-MethyltransferasesDNMT3L protein, humanBig dataCDO1DNA methylationDNMT3LHepatocellular carcinoma

Identifiers

PMID38308276
PMCPMC10837993
OpenAlexW4391466935

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.