Evidence map›Paper›PMID 38308239›Full record

ArticleBMC plant biology2024

Integrated transcriptomics and metabolomics analysis provides insights into aromatic volatiles formation in Cinnamomum cassia bark at different harvesting times.

Shaochang Yao, Xiaoming Tan, Ding Huang, Linshuang Li, Jianhua Chen, Ruhong Ming, Rongshao Huang, Chun Yao

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Shaochang YaoCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Xiaoming TanCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Ding HuangCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Linshuang LiCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Jianhua ChenCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Ruhong MingCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China.
Rongshao HuangCollege of Pharmacy, Guangxi University of Chinese Medicine, Nanning, 530200, China. Hrshao802@163.com.
Chun YaoGuangxi Scientific Experimental Center of Traditional Chinese Medicine, Guangxi University of Chinese Medicine, Nanning, 530200, China. yaochun111111@163.com.
Guangxi University · CNGuangxi University of Chinese Medicine · CNGuangxi Zhuang Autonomous Region Department of Education · CN

Funding

the Central Guide Local Development Project of Guangxi ZY22096003the Science and Technology Major Project of Guangxi AA22096029
6 · The paper itself

Abstract

backgroundCinnamomum cassia Presl, classified in the Lauraceae family, is widely used as a spice, but also in medicine, cosmetics, and food. Aroma is an important factor affecting the medicinal and flavoring properties of C. cassia, and is mainly determined by volatile organic compounds (VOCs); however, little is known about the composition of aromatic VOCs in C. cassia and their potential molecular regulatory mechanisms. Here, integrated transcriptomic and volatile metabolomic analyses were employed to provide insights into the formation regularity of aromatic VOCs in C. cassia bark at five different harvesting times.

resultsThe bark thickness and volatile oil content were significantly increased along with the development of the bark. A total of 724 differentially accumulated volatiles (DAVs) were identified in the bark samples, most of which were terpenoids. Venn analysis of the top 100 VOCs in each period showed that twenty-eight aromatic VOCs were significantly accumulated in different harvesting times. The most abundant VOC, cinnamaldehyde, peaked at 120 months after planting (MAP) and dominated the aroma qualities. Five terpenoids, α-copaene, β-bourbonene, α-cubebene, α-funebrene, and δ-cadinene, that peaked at 240 MAP could also be important in creating C. cassia's characteristic aroma. A list of 43,412 differentially expressed genes (DEGs) involved in the biosynthetic pathways of aromatic VOCs were identified, including phenylpropanoids, mevalonic acid (MVA) and methylerythritol phosphate (MEP). A gene-metabolite regulatory network for terpenoid and phenylpropanoid metabolism was constructed to show the key candidate structural genes and transcription factors involved in the biosynthesis of terpenoids and phenylpropanoids.

conclusionsThe results of our research revealed the composition and changes of aromatic VOCs in C. cassia bark at different harvesting stages, differentiated the characteristic aroma components of cinnamon, and illuminated the molecular mechanism of aroma formation. These foundational results will provide technical guidance for the quality breeding of C. cassia.

Indexed as

Cinnamomum aromaticumGene Expression ProfilingPlant BarkPlant BreedingTerpenesTerpenesAromatic volatilesC. cassiaCinnamonRegulatory networkTranscriptomic and metabolomic analysis

Identifiers

PMID38308239
PMCPMC10835945
OpenAlexW4391477972

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.