Evidence map›Paper›PMID 38308218›Full record

ArticleBMC genomics2024

Genome analysis of Shewanella putrefaciens 4H revealing the potential mechanisms for the chromium remediation.

Yajun Cai, Xu Chen, Hanghang Qi, Fantong Bu, Muhammad Shaaban, Qi-An Peng

Abstract read
In one paragraph

Article in BMC genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Biosorption of Hexavalent Chromium byIndian journal of microbiology · 2025
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yajun CaiCollege of Environmental Engineering, Wuhan Textile University, Wuhan, 430200, China.
Xu ChenCollege of Environmental Engineering, Wuhan Textile University, Wuhan, 430200, China.
Hanghang QiCollege of Environmental Engineering, Wuhan Textile University, Wuhan, 430200, China.
Fantong BuCollege of Environmental Engineering, Wuhan Textile University, Wuhan, 430200, China.
Muhammad ShaabanCollege of Agriculture, Henan University of Science and Technology, Luoyang, China.
Qi-An PengCollege of Environmental Engineering, Wuhan Textile University, Wuhan, 430200, China. pqa2002_@163.com.

Funding

Sci. and Technol. Res. Project in Edu. Bureau, Hubei,China B2018061
6 · The paper itself

Abstract

Microbial remediation of heavy metal polluted environment is ecofriendly and cost effective. Therefore, in the present study, Shewanella putrefaciens stain 4H was previously isolated by our group from the activated sludge of secondary sedimentation tank in a dyeing wastewater treatment plant. The bacterium was able to reduce chromate effectively. The strains showed significant ability to reduce Cr(VI) in the pH range of 8.0 to 10.0 (optimum pH 9.0) and 25-42 ℃ (optimum 30 ℃) and were able to reduce 300 mg/L of Cr(VI) in 72 h under parthenogenetic anaerobic conditions. In this paper, the complete genome sequence was obtained by Nanopore sequencing technology and analyzed chromium metabolism-related genes by comparative genomics The genomic sequence of S. putrefaciens 4H has a length of 4,631,110 bp with a G + C content of 44.66% and contains 4015 protein-coding genes and 3223,  2414, 2343 genes were correspondingly annotated into the COG, KEGG, and GO databases. The qRT-PCR analysis showed that the expression of chrA, mtrC, and undA genes was up-regulated under Cr(VI) stress. This study explores the Chromium Metabolism-Related Genes of S. putrefaciens 4H and will help to deepen our understanding of the mechanisms of Cr(VI) tolerance and reduction in this strain, thus contributing to the better application of S. putrefaciens 4H in the field of remediation of chromium-contaminated environments.

Indexed as

Shewanella putrefaciensBacteriaChromiumOxidation-ReductionChromiumchromium hexavalent ionCr(VI) reductionGenome sequenceMetabolism-related genesShewanella putrefaciens

Identifiers

PMID38308218
PMCPMC10837877

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.