Evidence map›Paper›PMID 38307988›Full record

ArticleCommunications biology2024

ATP-dependent conformational dynamics in a photoactivated adenylate cyclase revealed by fluorescence spectroscopy and small-angle X-ray scattering.

K Ujfalusi-Pozsonyi, E Bódis, M Nyitrai, A Kengyel, E Telek, I Pécsi, Z Fekete, N Varnyuné Kis-Bicskei, C Mas, D Moussaoui and 6 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

K Ujfalusi-PozsonyiDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.ORCID 0009-0001-0089-920X
E BódisDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.
M NyitraiDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.
A KengyelDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.
E TelekDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.ORCID 0000-0003-0396-4799
I PécsiDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.
Z FeketeDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.
N Varnyuné Kis-BicskeiDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary.
C MasUniv. Grenoble Alpes, CNRS, CEA, EMBL, ISBG, F-38000, Grenoble, France.ORCID 0000-0002-7733-6982
D MoussaouiEuropean Synchrotron Radiation Facility (ESRF), Grenoble, France.
P PernotEuropean Synchrotron Radiation Facility (ESRF), Grenoble, France.
M D TullyEuropean Synchrotron Radiation Facility (ESRF), Grenoble, France.ORCID 0000-0001-5450-9900
M WeikInstitut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, Grenoble, France.
G SchiròInstitut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, Grenoble, France.
S M KapetanakiInstitut de Biologie Structurale (IBS), Université Grenoble Alpes, CEA, CNRS, Grenoble, France. sofia.kapetanaki@aok.pte.hu.ORCID 0000-0003-1286-9929
A LukácsDepartment of Biophysics, Medical School, University of Pécs, 7624, Pécs, Hungary. andras.lukacs@aok.pte.hu.ORCID 0000-0001-8841-9823
University of Pecs · HUCentre National de la Recherche Scientifique · FREuropean Synchrotron Radiation Facility · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural insights into the photoactivated adenylate cyclases can be used to develop new ways of controlling cellular cyclic adenosine monophosphate (cAMP) levels for optogenetic and other applications. In this work, we use an integrative approach that combines biophysical and structural biology methods to provide insight on the interaction of adenosine triphosphate (ATP) with the dark-adapted state of the photoactivated adenylate cyclase from the cyanobacterium Oscillatoria acuminata (OaPAC). A moderate affinity of the nucleotide for the enzyme was calculated and the thermodynamic parameters of the interaction have been obtained. Stopped-flow fluorescence spectroscopy and small-angle solution scattering have revealed significant conformational changes in the enzyme, presumably in the adenylate cyclase (AC) domain during the allosteric mechanism of ATP binding to OaPAC with small and large-scale movements observed to the best of our knowledge for the first time in the enzyme in solution upon ATP binding. These results are in line with previously reported drastic conformational changes taking place in several class III AC domains upon nucleotide binding.

Indexed as

Adenosine TriphosphateAdenylyl CyclasesMolecular ConformationSpectrometry, FluorescenceX-RaysAdenosine TriphosphateAdenylyl Cyclases

Identifiers

PMID38307988
PMCPMC10837130
OpenAlexW4391474258

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.