Evidence map›Paper›PMID 38307462›Full record

ArticleJournal of food protection2024

Genetic Characteristics of Salmonella Isolates Recovered From Reused Broiler Litter Over Three Successive Flocks.

Reed Woyda, Adelumola Oladeinde, Dinku Endale, Timothy Strickland, Jodie Plumblee Lawrence, Zaid Abdo

Open access · goldAbstract read
In one paragraph

Article in Journal of food protection, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 98% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Reed WoydaDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, USA; Program of Cell and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA.
Adelumola OladeindeU.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA. Electronic address: ade.oladeinde@usda.gov.
Dinku EndaleSoutheast Watershed Research, USDA, Tifton, Georgia, USA.
Timothy StricklandSoutheast Watershed Research, USDA, Tifton, Georgia, USA.
Jodie Plumblee LawrenceU.S. National Poultry Research Center, USDA-ARS, Athens, Georgia, USA.
Zaid AbdoDepartment of Microbiology, Immunology and Pathology, Colorado State University, Fort Collins, Colorado, USA; Program of Cell and Molecular Biology, Colorado State University, Fort Collins, Colorado, USA. Electronic address: zaid.abdo@colostate.edu.
Colorado State University · USSoutheast Watershed Research Laboratory · USU.S. National Poultry Research Center · US

Funding

Predoctoral Training in Quantitative Cell & Molecular BiologyT32GM132057 · NIGMS · COLORADO STATE UNIVERSITY · PI Karen Marie Dobos, Brian Munsky · 2019 to 2026
$2.9M
NIGMS NIH HHS T32 GM132057
6 · The paper itself

Abstract

Salmonella infections are a leading cause of bacterial food-borne illness worldwide. Infections are highly associated with the consumption of contaminated food, and in particular, chicken meat. The severity of Salmonella infections depends on the presence of antimicrobial resistance genes and virulence factors. While there are many studies which have investigated Salmonella strains isolated from postharvest chicken samples, there is a gap in our understanding of the genetic properties that influence the persistence of Salmonella in preharvest and in particular their makeup of antimicrobial resistance genes and virulence factors. We used whole genome sequencing and hierarchical clustering to characterize and classify the genetic diversity of Salmonella enterica isolates (n = 55) recovered from the litter of commercial broiler chicken raised in four colocated broiler houses of one integrated farm over three consecutive flocks. The chicken were raised under a newly adopted "No Antibiotics Ever" program, and copper sulfate was administered via drinking water. In-silico serovar prediction identified three S. enterica serovars: Enteritidis (n = 12), Kentucky (n = 40), and Senftenberg (n = 3). Antimicrobial susceptibility testing revealed that only one S. Kentucky isolate was resistant to streptomycin, while the remaining isolates were susceptible to all antibiotics tested. Metal resistance operons, including copper and silver, were identified chromosomally and on plasmids in serovar Senftenberg and Kentucky isolates, respectively, while serovar Enteritidis carried several virulence factors on plasmids. Serovar Kentucky isolates harboring metal resistance operons were the only Salmonella isolates recovered from the litter of third flock cohort. These results suggest that there might be environmental selection for Salmonella strains carrying plasmid-associated metal resistance and virulence genes, which could play a role in their persistence in litter.

Indexed as

Anti-Infective AgentsSalmonella entericaSalmonella InfectionsAnimalsAnti-Bacterial AgentsChickensDrug Resistance, Multiple, BacterialHumansManureSalmonellaVirulence FactorsAnti-Bacterial AgentsAnti-Infective AgentsManureVirulence FactorsBroiler litterLitter reuseMetal resistanceSalmonellaVirulence factors

Identifiers

PMID38307462
PMCPMC11000695
OpenAlexW4391862370

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.