Evidence map›Paper›PMID 38303511›Full record

ArticleBiophysical journal2024

Measuring conformational equilibria in allosteric proteins with time-resolved tmFRET.

William N Zagotta, Eric G B Evans, Pierce Eggan, Maxx H Tessmer, Kyle D Shaffer, E James Petersson, Stefan Stoll, Sharona E Gordon

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

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  12. Long-distance tmFRET using bipyridyl- and phenanthroline-based ligands.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

William N ZagottaDepartment of Physiology and Biophysics, University of Washington, Seattle, Washington. Electronic address: zagotta@uw.edu.
Eric G B EvansDepartment of Physiology and Biophysics, University of Washington, Seattle, Washington; Department of Chemistry, University of Washington, Seattle, Washington.
Pierce EgganDepartment of Physiology and Biophysics, University of Washington, Seattle, Washington.
Maxx H TessmerDepartment of Chemistry, University of Washington, Seattle, Washington.
Kyle D ShafferDepartment of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania.
E James PeterssonDepartment of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania.
Stefan StollDepartment of Chemistry, University of Washington, Seattle, Washington.
Sharona E GordonDepartment of Physiology and Biophysics, University of Washington, Seattle, Washington. Electronic address: seg@uw.edu.
University of Washington · USUniversity of Pennsylvania · US

Funding

TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
GATING MECHANISMS OF RETINAL ROD CGMP-ACTIVATED CHANNELSR01EY010329 · NEI · UNIVERSITY OF WASHINGTON · PI ZAGOTTA, WILLIAM N · 1994 to 2023
$7.7M
Inflammatory hyperalgesia mediated by TRPV1, the pepper spray receptor in the corR01EY017564 · NEI · UNIVERSITY OF WASHINGTON · PI GORDON, SHARONA E · 2006 to 2022
$6.5M
VISUAL SCIENCES TRAINING PROGRAMT32EY007031 · NEI · UNIVERSITY OF WASHINGTON · PI Wyeth Daniel Bair, Anitha Pasupathy · 1985 to 2026
$6.1M
Conformational Energetics and Heterogeneity to Reveal Gating Mechanisms of TRPV and TRPM Ion ChannelsR35GM145225 · NIGMS · UNIVERSITY OF WASHINGTON · PI Sharona E Gordon · 2022 to 2026
$3.4M
Structural energetics of voltage- and ligand-dependent gating in ion channelsR35GM148137 · NIGMS · UNIVERSITY OF WASHINGTON · PI William N Zagotta · 2023 to 2026
$2.0M
Equipment Supplement: Analysis tools for quantifying protein conformational landscapes using DEER spectroscopyR01GM125753 · NIGMS · UNIVERSITY OF WASHINGTON · PI STOLL, STEFAN · 2019 to 2022
$1.3M
Functional and structural dynamics of KCNH4 and KCNH8R03TR004135 · NCATS · UNIVERSITY OF WASHINGTON · PI ZAGOTTA, WILLIAM N · 2022 to 2022
$156k
NCATS NIH HHS R03 TR004135NEI NIH HHS R01 EY010329NEI NIH HHS R01 EY017564NEI NIH HHS T32 EY007031NIGMS NIH HHS R01 GM125753NIGMS NIH HHS R35 GM145225NIGMS NIH HHS R35 GM148137NIGMS NIH HHS T32 GM008268
6 · The paper itself

Abstract

Proteins are the workhorses of biology, orchestrating a myriad of cellular functions through intricate conformational changes. Protein allostery, the phenomenon where binding of ligands or environmental changes induce conformational rearrangements in the protein, is fundamental to these processes. We have previously shown that transition metal Förster resonance energy transfer (tmFRET) can be used to interrogate the conformational rearrangements associated with protein allostery and have recently introduced novel FRET acceptors utilizing metal-bipyridyl derivatives to measure long (>20 Å) intramolecular distances in proteins. Here, we combine our tmFRET system with fluorescence lifetime measurements to measure the distances, conformational heterogeneity, and energetics of maltose-binding protein, a model allosteric protein. Time-resolved tmFRET captures near-instantaneous snapshots of distance distributions, offering insights into protein dynamics. We show that time-resolved tmFRET can accurately determine distance distributions and conformational heterogeneity of proteins. Our results demonstrate the sensitivity of time-resolved tmFRET in detecting subtle conformational or energetic changes in protein conformations, which are crucial for understanding allostery. In addition, we extend the use of metal-bipyridyl compounds, showing that Cu(phen)

Indexed as

Fluorescence Resonance Energy TransferMaltose-Binding ProteinsProtein ConformationAllosteric RegulationTime FactorsMaltose-Binding Proteins

Identifiers

PMID38303511
PMCPMC11309986
OpenAlexW4391451940

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.