Evidence map›Paper›PMID 38302799›Full record

ArticleMolecular biology reports2024

Transcriptome analysis of reproductive tract tissues of male river prawn Macrobrachium americanum.

Miriam Victoria Martín-Manzo, Rosa María Morelos-Castro, Adrian Munguia-Vega, Maritza Lourdes Soberanes-Yepiz, Edilmar Cortés-Jacinto

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Molecular biology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Miriam Victoria Martín-ManzoCentro de Investigaciones Biológicas del Noroeste (CIBNOR), Playa Palo de Santa Rita Sur, Av. Instituto Politécnico Nacional 195, 23096, La Paz, BCS, Mexico.ORCID http://orcid.org/0000-0001-9797-735X
Rosa María Morelos-CastroCentro de Investigaciones Biológicas del Noroeste Tepic, Investigadoras E Investigadores Por México-CONACYT. Unidad Nayarit, Nayarit, Mexico.ORCID http://orcid.org/0000-0002-7818-2743
Adrian Munguia-VegaApplied Genomics Lab, Av. Gral. Félix Ortega Aguilar, 23000, La Paz, Baja California Sur, Mexico.ORCID http://orcid.org/0000-0003-3545-6510
Maritza Lourdes Soberanes-YepizCentro de Investigaciones Biológicas del Noroeste (CIBNOR), Playa Palo de Santa Rita Sur, Av. Instituto Politécnico Nacional 195, 23096, La Paz, BCS, Mexico.ORCID http://orcid.org/0000-0002-9957-2468
Edilmar Cortés-JacintoCentro de Investigaciones Biológicas del Noroeste (CIBNOR), Playa Palo de Santa Rita Sur, Av. Instituto Politécnico Nacional 195, 23096, La Paz, BCS, Mexico. ecortes04@cibnor.mx.ORCID http://orcid.org/0000-0002-6098-0640
Instituto Politécnico Nacional · MXCentro de Investigaciones Biológicas Margarita Salas · ESSecretaría de Ciencia, Humanidades, Tecnología e Innovación · MXUniversity of Arizona · US

Funding

Consejo Nacional de Ciencia y Tecnología (CONACYT) CIBNOR-Unidad NayaritConsejo Nacional de Ciencia y Tecnología (CONACYT) FC2016/2930Estancia posdoctoral por México "Mujeres indígenas" - Centro de Investigaciones Biológicas del Noroeste SC CVU 666909Estancias posdoctorales por México-CONACYT CVU: 375953
6 · The paper itself

Abstract

backgroundThe river prawn, Macrobrachium americanum (M. americanum), is one of the largest prawns of the genus in Latin America and is an amphidromous species distributed along the Pacific coast of America. This prawn has commercial value due to its size and taste, making it a good option for aquaculture production. Its culture has been attempted in ponds and concrete tanks, but no successful technique can still support commercial production. Understanding the mechanisms that regulate reproduction at the molecular level is very important. This knowledge can provide tools for manipulating transcripts, which could increase the number or size of animals in the culture. Our understanding of the mechanism that regulates the reproduction of M. americanum at the molecular level is limited.

aimPerform and analyze the transcriptome assembly of the testes, vas deferens, and terminal ampulla of M. americanum. to provide new molecular information about its reproduction. METHODS AND

resultsThe cDNA library was constructed and sequenced for each tissue to identify novel transcripts. A combined transcriptome with the three tissues was assembled using Trinity software. Unigenes were annotated using BLASTx and BLAST2GO. The transcriptome assembly generated 1,059,447 unigenes, of which 7222 genes had significant hits (e-value < 1 × 10

conclusionsThese results provide new molecular information about M. americanum reproduction, representing a reference point for further genetic studies of this species.

Indexed as

DecapodaPalaemonidaePenaeidaeAnimalsGene Expression ProfilingGene LibraryMaleTranscriptomeMacrobrachium americanumReproductionRiver prawnTranscriptome

Identifiers

PMID38302799
OpenAlexW4391427329

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.