Evidence map›Paper›PMID 38302657›Full record

ArticleScientific reports2024

A clinically relevant computed tomography (CT) radiomics strategy for intracranial rodent brain tumour monitoring.

Kate Connor, Emer Conroy, Kieron White, Liam P Shiels, Simon Keek, Abdalla Ibrahim, William M Gallagher, Kieron J Sweeney, James Clerkin, David O'Brien and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Kate ConnorDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, York Street, Dublin 2, Ireland.
Emer ConroyNational Pre-Clinical Imaging Centre (NPIC), Dublin, Ireland.
Kieron WhiteDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, York Street, Dublin 2, Ireland.
Liam P ShielsDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, York Street, Dublin 2, Ireland.
Simon KeekThe D-Lab: Department of Precision Medicine, GROW - School for Oncology and Reproduction, Maastricht University, Maastricht, The Netherlands.
Abdalla IbrahimThe D-Lab: Department of Precision Medicine, GROW - School for Oncology and Reproduction, Maastricht University, Maastricht, The Netherlands.
William M GallagherNational Pre-Clinical Imaging Centre (NPIC), Dublin, Ireland.
Kieron J SweeneyDepartment of Neurosurgery, Beaumont Hospital, Dublin, Ireland.
James ClerkinDepartment of Neurosurgery, Beaumont Hospital, Dublin, Ireland.
David O'BrienDepartment of Neurosurgery, Beaumont Hospital, Dublin, Ireland.
Jane B CryanDepartment of Neurosurgery, Queen Elizabeth Hospital, Birmingham, UK.
Philip J O'HalloranDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, York Street, Dublin 2, Ireland.
Josephine HeffernanDepartment of Neuropathology, Beaumont Hospital, Dublin, Ireland.
Francesca BrettDepartment of Neuropathology, Beaumont Hospital, Dublin, Ireland.
Philippe LambinThe D-Lab: Department of Precision Medicine, GROW - School for Oncology and Reproduction, Maastricht University, Maastricht, The Netherlands.
Henry C WoodruffThe D-Lab: Department of Precision Medicine, GROW - School for Oncology and Reproduction, Maastricht University, Maastricht, The Netherlands.
Annette T ByrneDepartment of Physiology and Medical Physics, Royal College of Surgeons in Ireland, York Street, Dublin 2, Ireland. annettebyrne@rcsi.ie.

Funding

Health Research Board ILP-POR-2022-007
6 · The paper itself

Abstract

Here, we establish a CT-radiomics based method for application in invasive, orthotopic rodent brain tumour models. Twenty four NOD/SCID mice were implanted with U87R-Luc2 GBM cells and longitudinally imaged via contrast enhanced (CE-CT) imaging. Pyradiomics was employed to extract CT-radiomic features from the tumour-implanted hemisphere and non-tumour-implanted hemisphere of acquired CT-scans. Inter-correlated features were removed (Spearman correlation > 0.85) and remaining features underwent predictive analysis (recursive feature elimination or Boruta algorithm). An area under the curve of the receiver operating characteristic curve was implemented to evaluate radiomic features for their capacity to predict defined outcomes. Firstly, we identified a subset of radiomic features which distinguish the tumour-implanted hemisphere and non- tumour-implanted hemisphere (i.e, tumour presence from normal tissue). Secondly, we successfully translate preclinical CT-radiomic pipelines to GBM patient CT scans (n = 10), identifying similar trends in tumour-specific feature intensities (E.g. 'glszm Zone Entropy'), thereby suggesting a mouse-to-human species conservation (a conservation of radiomic features across species). Thirdly, comparison of features across timepoints identify features which support preclinical tumour detection earlier than is possible by visual assessment of CT scans. This work establishes robust, preclinical CT-radiomic pipelines and describes the application of CE-CT for in-depth orthotopic brain tumour monitoring. Overall we provide evidence for the role of pre-clinical 'discovery' radiomics in the neuro-oncology space.

Indexed as

Brain NeoplasmsRadiomicsAnimalsHumansMiceMice, Inbred NODMice, SCIDTomography, X-Ray Computed

Identifiers

PMID38302657
PMCPMC10834979

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.