Evidence map›Paper›PMID 38302256›Full record

ArticleRNA (New York, N.Y.)2024

T helper cells exhibit a dynamic and reversible 3'-UTR landscape.

Denis Seyres, Oliver Gorka, Ralf Schmidt, Romina Marone, Mihaela Zavolan, Lukas T Jeker

Abstract read
In one paragraph

Article in RNA (New York, N.Y.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Denis Seyres *Department of Biomedicine, Basel University Hospital and University of Basel, CH-4031 Basel, Switzerland denis.seyres@unibas.ch lukas.jeker@unibas.ch.ORCID 0000-0002-2066-6980
Oliver Gorka *Department of Biomedicine, Basel University Hospital and University of Basel, CH-4031 Basel, Switzerland.ORCID 0000-0002-8245-3008
Ralf Schmidt *Computational and Systems Biology, Biozentrum, University of Basel, 4056 Basel, Switzerland.
Romina MaroneDepartment of Biomedicine, Basel University Hospital and University of Basel, CH-4031 Basel, Switzerland.ORCID 0000-0003-1474-1689
Mihaela ZavolanComputational and Systems Biology, Biozentrum, University of Basel, 4056 Basel, Switzerland.ORCID 0000-0002-8832-2041
Lukas T JekerDepartment of Biomedicine, Basel University Hospital and University of Basel, CH-4031 Basel, Switzerland denis.seyres@unibas.ch lukas.jeker@unibas.ch.ORCID 0000-0002-3359-8796

Funding

The Role of microRNAs in autoimmune diseaseR01AI106923 · NIAID · UNIVERSITY HOSPITAL BASEL · PI JEKER, LUKAS T. · 2014 to 2018
$1.3M
NIAID NIH HHS R01 AI106923
6 · The paper itself

Abstract

3' untranslated regions (3' UTRs) are critical elements of messenger RNAs, as they contain binding sites for RNA-binding proteins (RBPs) and microRNAs that affect various aspects of the RNA life cycle including transcript stability and cellular localization. In response to T cell receptor activation, T cells undergo massive expansion during the effector phase of the immune response and dynamically modify their 3' UTRs. Whether this serves to directly regulate the abundance of specific mRNAs or is a secondary effect of proliferation remains unclear. To study 3'-UTR dynamics in T helper cells, we investigated division-dependent alternative polyadenylation (APA). In addition, we generated 3' end UTR sequencing data from naive, activated, memory, and regulatory CD4

Indexed as

MicroRNAsPolyadenylation3' Untranslated RegionsRNA-Binding ProteinsRNA, MessengerRNA-SeqT-Lymphocytes, Helper-Inducer3' Untranslated RegionsMicroRNAsRNA-Binding ProteinsRNA, Messenger3′-UTR usagealternative polyadenylationeffector/memory T cellsnaive T cellsposttranscriptional regulationproliferationT helper cells

Identifiers

PMID38302256
PMCPMC10946431

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.