Evidence map›Paper›PMID 38300958›Full record

ArticlePLoS biology2024

Cellular arrangement impacts metabolic activity and antibiotic tolerance in Pseudomonas aeruginosa biofilms.

Hannah Dayton, Julie Kiss, Mian Wei, Shradha Chauhan, Emily LaMarre, William Cole Cornell, Chase J Morgan, Anuradha Janakiraman, Wei Min, Raju Tomer and 3 more

Abstract read
In one paragraph

Article in PLoS biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Journal of clinical microbiology · 2025
    Article
  10. Single-cell lysis patterns morphogenesis of eDNA in the matrix ofProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Oxygen microenvironments inMicrobiology (Reading, England) · 2025
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Hannah DaytonDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Julie KissDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Mian WeiDepartment of Chemistry, Columbia University, New York, New York, United States of America.
Shradha ChauhanDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Emily LaMarreProgram in Biology, The Graduate Center, City University of New York, New York, New York, United States of America.
William Cole CornellDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Chase J MorganDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Anuradha JanakiramanProgram in Biology, The Graduate Center, City University of New York, New York, New York, United States of America.
Wei MinDepartment of Chemistry, Columbia University, New York, New York, United States of America.
Raju TomerDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Alexa Price-WhelanDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
Jasmine A NirodyDepartment of Organismal Biology and Anatomy, University of Chicago, Chicago, Illinois, United States of America.
Lars E P DietrichDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.ORCID 0000-0003-2049-1137

Funding

ClearScopeR44MH116827 · NIMH · MICROBRIGHTFIELD, LLC · PI GLASER, JACOB R · 2018 to 2022
$4.5M
Integration of redox-balancing mechanisms in Pseudomonas aeruginosa biofilmsR01AI103369 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DIETRICH, LARS · 2013 to 2022
$4.1M
A comparative approach for decomposing the mammalian brain architectural complexityDP2MH119423 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TOMER, RAJU · 2018 to 2018
$2.4M
High-resolution volumetric imaging of metabolic activity in tissues and its application to tumor metabolismR01EB029523 · NIBIB · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MIN, WEI · 2020 to 2023
$1.6M
NIAID NIH HHS R01 AI103369NIBIB NIH HHS R01 EB029523NIMH NIH HHS DP2 MH119423NIMH NIH HHS R44 MH116827
6 · The paper itself

Abstract

Cells must access resources to survive, and the anatomy of multicellular structures influences this access. In diverse multicellular eukaryotes, resources are provided by internal conduits that allow substances to travel more readily through tissue than they would via diffusion. Microbes growing in multicellular structures, called biofilms, are also affected by differential access to resources and we hypothesized that this is influenced by the physical arrangement of the cells. In this study, we examined the microanatomy of biofilms formed by the pathogenic bacterium Pseudomonas aeruginosa and discovered that clonal cells form striations that are packed lengthwise across most of a mature biofilm's depth. We identified mutants, including those defective in pilus function and in O-antigen attachment, that show alterations to this lengthwise packing phenotype. Consistent with the notion that cellular arrangement affects access to resources within the biofilm, we found that while the wild type shows even distribution of tested substrates across depth, the mutants show accumulation of substrates at the biofilm boundaries. Furthermore, we found that altered cellular arrangement within biofilms affects the localization of metabolic activity, the survival of resident cells, and the susceptibility of subpopulations to antibiotic treatment. Our observations provide insight into cellular features that determine biofilm microanatomy, with consequences for physiological differentiation and drug sensitivity.

Indexed as

Anti-Bacterial AgentsPseudomonas InfectionsBiofilmsFimbriae, BacterialHumansPseudomonas aeruginosaAnti-Bacterial Agents

Identifiers

PMID38300958
PMCPMC10833521

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.